barSeed - Barley Seed Development Database

Probe CUST_23475_PI390587928

Source Contig U35_48972

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23475_PI390587928	Hv_44K_v2	GAAAATGTTGAGTGGTTGGCCAAGGGTTAATGTATTTTCCTTTTAAATTTTCCGTTCCAA	17	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70664.3	3672	2e-24	3496 - 3555	100	60 / 60	plus	ABC01735 ABC01736 ABC34559 ABC42329
MLOC	MLOC_70664.1	3027	2e-24	2861 - 2920	100	60 / 60	plus	ABC01735 ABC01736 ABC34559 ABC42329
MLOC	MLOC_70664.2	2877	2e-24	2766 - 2825	100	60 / 60	plus	ABC01735 ABC01736 ABC34559 ABC42329
JLOC1	JLOC1_46905.1	2973	8e-25	2741 - 2800	100	60 / 60	plus
Harvest21	ABC50850	613	3e-25	18 - 77	100	60 / 60	minus
Harvest21	ABC42329	537	3e-25	44 - 103	100	60 / 60	minus	ABC42329
Harvest35	U35_48972	613	3e-25	18 - 77	100	60 / 60	minus
Harvest35	U35_44514	537	3e-25	44 - 103	100	60 / 60	minus

Contig Sequence (613 bp)

>U35_48972 613 Hv_44K_v2
CTTTATTAATATATAAATTGGAACGGAAAATTTAAAAGGAAAATACATTAACCCTTGGCC
AACCACTCAACATTTTCGCATGTTACAGTTGTGGCCGTCCTCCACACATCTCATCATATA
GAGATGCTGTTGGGGATGCCCCTGGCAGTGAGCCCCTCAGCCTTGCCCGTGTGGTCGGAG
GTGTTGGGGTAGAGCAGCATGTATGGAAAGTGGACCGGTCCATTGCGGTTCTTGAGCTGG
GGGTTTCCGTTCAAGGCGACCACCTCGCTCTCGATGCCCTCCAGCCTCGTGCCGAACCGC
TTGAACGCCTCCAGCGCCTTGGCATCCGACGTCCACTCCGGCGTGTCACGCTGCCCGAGG
TAAATCTCGTCGGAGGAGTGCTTGGATAGGATCTCCAGCAGAGAAATGCCAATGATGGCC
TGCAGCTGGTTGGTGATGGTGCGGATGAACACCTTTTCTGGATCGCGGGCCAGCAATGCG
TACTCCTCGGTGCCTGGCTCCGGCATCGGACGACGGCTCGCTGATGGCTTGTTGGGGTGG
TAACCGGCGTACGGGTACTGCCCGAAGTTGACGGCGGCGTGCAGCGCCGACCCGGTCCAG
ATGATGGTGGTGC

Homology of Contig U35_48972 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g52860.1	871	2e-85	protein\|lipoxygenase, putative, expressed
Brachypodium v1_2	Bradi1g09260.1	865	6e-98
Arabidopsis v10	AT3G22400.1	886	1e-66	\| Symbols: LOX5 \| PLAT/LH2 domain-containing lipoxygenase family protein \| chr3:7927011-7931167 FORWARD LENGTH=886