barSeed - Barley Seed Development Database

Probe CUST_23279_PI390587928

Source Contig U35_10632

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23279_PI390587928	Hv_44K_v2	GGCGTTAGCAGGGATATGGACTGTCATTTGCTTTTCTTTAAAGTCTTCTTAAGGCATTTG	808	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369368	1309	2e-24	1133 - 1192	100	60 / 60	plus	ABC03650 ABC21572
MLOC	MLOC_65389.4	994	2e-24	893 - 952	100	60 / 60	plus	ABC21572
MLOC	MLOC_65389.3	1110	2e-24	937 - 996	100	60 / 60	plus	ABC21572
MLOC	MLOC_65389.1	1400	2e-24	1227 - 1286	100	60 / 60	plus	ABC21572
JLOC1	JLOC1_43027.2	1836	8e-25	1609 - 1668	100	60 / 60	plus
JLOC1	JLOC1_43027.1	1413	8e-25	1186 - 1245	100	60 / 60	plus
Harvest21	ABC21572	931	3e-25	64 - 123	100	60 / 60	minus	ABC21572
Harvest35	U35_10632	931	3e-25	809 - 868	100	60 / 60	plus

Contig Sequence (931 bp)

>U35_10632 931 Hv_44K_v2
GAAGGAAGAGGGCTCGGATGATTGGCGGAGGAGATTACCGGAGCTCGCGAGGAGGCTCGA
GGAAATCTTGTTTATGAAATACCCAAGCAAGAGGGAGTACTACTGTATGATGCGGGCACC
AATTGAGCCACAATTGCAGTATGCTATCAAGACCTTGAGTGCACGGAACCAACAAAATCA
ACAAAACCTAGCCTCGTCAAGACAGATAGCATCTTCCCCTGGCCATGGGACGATGATTCT
GACACCTGGTATCACGCAAGGCGCAAGTGAAAATTCTAGAATGTCTTATGTGACAGGCAA
TATTGGCCCTTCCTCGTCTAGTGCAGACATGGTTCCTCCGAACACCAACATGGGTACCTT
GCTGCCAGGGGAAGCTCCTGATGAGCATGTGAACACACTTCTATCTCTGGGGATGAACCC
TACACAGCATGATCACCCCAGAGCCAACAACAACAACCTCATGATAGACACAGTGGACAT
ACCTGCAACCAACAGGCTCTTGAAATCGCGTGCACCTGTGAAGGAAGTCCGAAATGAGCC
AAAGTTTAGCTGTCCAGTCTGCATGAATGAGCTGGTCGATCCATCATCAACCATATGTGG
CCACATCTTCTGCCAGAAGTGCATCCAGGCCTCCATCCAGGCTCAGAGCAAGTGTCCGAC
CTGCCGTAGGACGTTAACCGTGAATTGTTTCCACCGCGTCTACCTCCCGACGATGGACTG
ACCTGATCCACCCTGTTTTATTTACTCTTTTACCCCCGGGTGCTGCTGATCAGATGGTAA
CATTTGAGAAGCAGGTTTGGTGACTGACGGCGTTAGCAGGGATATGGACTGTCATTTGCT
TTTCTTTAAAGTCTTCTTAAGGCATTTGTATTATTTACCTGTATAAGGTATATTTACTTC
NCGTTGTGAGTTGTATTNCTNTTGTATATTG

Homology of Contig U35_10632 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None