- Probe CUST_23193_PI390587928
- Source Contig U35_22707
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_23193_PI390587928 | Hv_44K_v2 | GAAAGACCAGGGGAACACATTGCATATTACAAGATAGCTAGACCACTATAAATGGGCCTT | 520 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK374062 | 1766 | 3e-22 | 595 - 653 | 98 | 59 / 60 | plus | ABC15789 ABC18549 ABC19664 |
| MLOC | MLOC_19196.12 | 1903 | 3e-22 | 525 - 583 | 98 | 59 / 60 | plus | ABC15789 ABC18549 ABC19664 |
| MLOC | MLOC_19196.5 | 1420 | 3e-22 | 172 - 230 | 98 | 59 / 60 | plus | ABC15789 ABC18549 ABC19664 |
| MLOC | MLOC_19196.6 | 1320 | 3e-22 | 172 - 230 | 98 | 59 / 60 | plus | ABC15789 ABC18549 ABC19664 |
| MLOC | MLOC_19196.2 | 1383 | 3e-22 | 172 - 230 | 98 | 59 / 60 | plus | ABC15789 ABC18549 ABC19664 |
| MLOC | MLOC_19196.14 | 1568 | 3e-22 | 226 - 284 | 98 | 59 / 60 | plus | ABC15789 ABC18549 ABC19664 |
| MLOC | MLOC_19196.10 | 1481 | 3e-22 | 215 - 273 | 98 | 59 / 60 | plus | ABC15789 ABC18549 ABC19664 |
| JLOC1 | JLOC1_13318.10 | 1388 | 1e-22 | 143 - 201 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_13318.9 | 1405 | 1e-22 | 157 - 215 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_13318.8 | 1473 | 1e-22 | 225 - 283 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_13318.7 | 1604 | 1e-22 | 166 - 224 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_13318.3 | 1478 | 1e-22 | 230 - 288 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_13318.1 | 1420 | 1e-22 | 172 - 230 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC17734 | 699 | 5e-23 | 366 - 424 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC34819 | 633 | 8e-21 | 534 - 596 | 95 | 60 / 63 | plus | |
| Harvest35 | U35_22707 | 855 | 3e-25 | 521 - 580 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_9707 | 766 | 8e-21 | 493 - 555 | 95 | 60 / 63 | plus |
Contig Sequence (855 bp)
>U35_22707 855 Hv_44K_v2 GCCGCGTTACATCCGCCGCCTCCTCCTCGTCTCCGCCGCCGCGGCCTTCATCTACATCCA AGTAAACCCCCTCCCTCCCTCCTTTGCTCTGCTCTCTCCGGCTCTCCGCGTATCAGATCC ATTCCGCTCAGCCAGTCGCCGGCCGGGGATCTGACCGCCTCCACCCTCATCTCCTCCACC CGAAAATCAGATTAGCGGAGTAGATTTCCCCTTGATTCGGTCTCCCCTTTCTGTTCAGGT GCGGCTCTTCTCTACCCAGTCTCATGACGCCGGACGCCTCGCCCTCGCCGGAGCAGATCA ACCTGATCTCCCCGTCGCCGCTGTTGTCATAATGGCTTGCAATCGACCAGACTATTTGCA GAGGACAGTTGAATCTATCCTCAAGTACCAGAAAGCAGTTGCTTCAAAGTTCCCACTATT TATATCGCAGGATGGAACAAATGGAGATGTAAAAAATAAGGCCCTGAGTTATACCCAAAT AAGATATATGCAGCATGTAGATCTCGAACCTGTGCACACTGAAAGACCAGGGGAACACAT TGCATATTACAAGATAGCTAGACCACTATAAATGGGCCTTGGATGAGCTATTCATTAAGC ATGATTTTCGCCGAGTTATCATTCTGGAAGATGACATGGAGATCGCCCCAGATTTCTTCG ACTACTTCGAGGCTGCAGCGAAATTACTTGATACTGACAAGTCGATAATGGCTGTTTCTT CTTGGAATGACAATGGGCAAAAGCAGTTCGTTTATGACCCAAAAGCTCTTTACCGTTCGG ACTTCTTTCCTGGGCTTGGATGGATGCTAACAAAGCCAACATGGATGGAGCTGTCACCAA AGTGGCCCAAAGCTT
Homology of Contig U35_22707 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi3g60820.1 | 444 | 1e-91 | |
| Arabidopsis v10 | AT4G38240.1 | 444 | 3e-77 | | Symbols: CGL1, CGL, GNTI | alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative | chr4:17932006-17935209 REVERSE LENGTH=444 |