barSeed - Barley Seed Development Database

Probe CUST_23121_PI390587928

Source Contig U35_10769

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23121_PI390587928	Hv_44K_v2	CATTGGAACATACTTTGCCAGGGTTTGATTTCAGAACATCTAAAGAATCTACTGGTAATG	498	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250505.1	1727	2e-24	709 - 768	100	60 / 60	plus	ABC19031 ABC48864
MLOC	MLOC_27074.2	850	2e-24	685 - 744	100	60 / 60	minus	None
JLOC1	JLOC1_18321.1	819	8e-25	649 - 708	100	60 / 60	minus
Harvest21	ABC21886	559	3e-25	499 - 558	100	60 / 60	plus
Harvest35	U35_10769	561	3e-25	499 - 558	100	60 / 60	plus

Contig Sequence (561 bp)

>U35_10769 561 Hv_44K_v2
TCCACCATGCCACCTTGCAGAGATGCGTACGTTCGCACTTCCCCTCTTCCTTTCACTTCG
CGTCCGTCCTGGTAAGCACTGGGCTTGACGTCTTCCCCTGCTTCTTTTCCTCTTTCTGTT
AGGTGACCCTCATTGACTGGTGGCTGCTGAGGGGTCAAGGCGGCAAGATCTGTGTTACCG
GGTACATCGACCCGATTTTTCGGAGGAAACGATCAGTTCGACTATTCATTTCTAGTCCCA
TTACAGTGCGGCATGCTGAAGGTACTCTTGAGACTGCAGATCACAGATTTGTATTAACTA
GGGGTCCATTAAACATCAAAAAGATGGATTGCAATGGATTTCCTTCTGAGGTTTCGAATC
AGTTCAGGCTTGGTTTTCCTATTCAATGGGAGAAATATGTTAATTCTAACATGAAACAGG
CGAATGAACACACGCTATCTCCAGAAAAATCAACTGAATATTCTGTAGAGGAGTTCTTGT
GCGGCAGCTTTGCCAATTCATTGGAACATACTTTGCCAGGGTTTGATTTCAGAACATCTA
AAGAATCTACTGGTAATGCAG

Homology of Contig U35_10769 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None