barSeed - Barley Seed Development Database

Probe CUST_230_PI415269222

Source Contig TA30897_4513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_230_PI415269222	Hv_44K_v2	ACGTTCTTCCGGAGCTAGAGCTTCTGCTTATGTAAGTGAAAGGGTATAAATTTTCATGAC	1569	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252969.1	1534	2e-24	1421 - 1480	100	60 / 60	plus	ABC01795 ABC01799 ABC01802 ABC01805
MLOC	MLOC_6761.1	383	2e-24	39 - 98	100	60 / 60	minus	ABC01795 ABC01802
MLOC	MLOC_6759.2	3894	2e-24	3551 - 3610	100	60 / 60	minus	ABC01795 ABC01802 ABC08969
JLOC1	JLOC1_4421.1	531	8e-25	188 - 247	100	60 / 60	minus
Harvest21	ABC01802	632	3e-25	17 - 76	100	60 / 60	minus	ABC01802
Harvest35	U35_14238	632	3e-25	557 - 616	100	60 / 60	plus

Contig Sequence (1629 bp)

>TA30897_4513 1629 Hv_44K_v2
CCAAGGTTAATGCCGCCGAGGCATTTAAGATTGCGGGCATCCAACACGGCTTCTTCGAGC
TGCAACCGAAGGAAGGCCTTGCTATGGTTAATGGTACGGCGGTGGGCTCTGGACTCGCGT
CCATTGTTCTCTTTGAAGCCAATGTCCTTGGTGTGCTTGCTGAAGTTTTGTCGGCCGTGT
TCTGCGAAGTGATGAACGGCAAGCCAGAATACACCGACCACCTGACACACAAGTTGAAGC
ATCACCCGGGGCAGATCGAGGCCGCGGCCATCATGGAGCACATCCTAGAGGGCAGCTCCT
ACATGATGCTCGCGAAGAAGCTTGGTGAGCTCGACCCATTGATGAAGCCGAAGCAAGACA
GATATGCTCTTCGCACATCGCCGCAATGGCTTGGGCCACAAATTGAGGTCATCCGTGCAG
CGACGAAGTCGATCGAGCGCGAGATCAACTCTGTCAATGACAACCCACTCATTGACGTGT
CTCGTGGGAAGGCAATCCATGGTGGCAACTTCCAGGGCACGCCCATCNGGTGTGTCCATG
GACAACACGAAGCTTGCCATTGCTGCGATCGGCAAGCTCATGTTTGCCCAATTCTCGGAG
CTAGTGAACGACTTCTACAACAATGGCTTGCCCTCCAACCTCTCTGGTAGTCGCAACCCA
AGCCTGGACTATGGCTTCAAGGGTGCCGAGATCGCCATGGCATCATACTGCTCGGAGCTT
CAATTCTTGGGCAACCCTGTGACCAACCACGTCCAGAGTGCGGAGCAACACAACCAAGAC
GTTAACTCCCTTGGATTAATCTCGGCCCGGAAGACCGCTGAGGCCATCGACATTCTAAAG
CTCATGTCCTCTACGTTTTTGGTTGCGCTCTGCCAAGCCATCGACCTGCGCCACCTCGAG
GAGAATGTCAAGAACGCAGTCAAAAGTTGTGTCACAAGAGTGGCTAGGAAGACCCTAATC
ACAAATGACATGGGTGGCCTCCACAACGCTCGTTTTTGTGAGAAGGACCTGCTCCAGACA
ATCGACCGCGAGGCAGTGTTTGCGTATGCAGACGACCCTTGCAGCGCCAACTACCCTCTC
ATGAAGAAGATGCGTGCGGTGCTGGTGGAGCACGCCCTGGCCAACGGCGAGGCTGAGCGC
AACGTGGAAACCTCGGTGTTTGCCAAGGTTGCCAAATTCGAGCAGGAGCTCTGTGCTACA
CTACCTCAGGAGGTTGAGGCTGCTAGAGGTGCAGTGGAGAATGGCACCGCCGCAGAACCA
AACCGTATCGTAGACTGCCGGTCATACCCTCTGTACCGGTTTGTGCGCGAGGAGCTGGGC
ACGGTGTACTTGACCGGAGAGAAGACTCGGTCACCCGGCGAGGAGGTGGACAAAGTGTTC
GTTGCCATGAACCAGGGTAAGCACATCGATGCGCTGCTGGAGTGCCTCAAGGAGTGGAAC
GGCGAGCCCCTCCCTATCAGCTAATCAATGAGATGAAGAGAAGATGCCGTGCTTCACTAA
TTCTGAAAACTGATAATACTGTTCTTTTATTTTATTTTATTTTTCCTCTTCTAAAGAGCT
GATGCATTAACGTTCTTCCGGAGCTAGAGCTTCTGCTTATGTAAGTGAAAGGGTATAAAT
TTTCATGAC

Homology of Contig TA30897_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g43800.1	715	protein\|phenylalanine ammonia-lyase, putative, expressed
Brachypodium v1_2	Bradi5g15830.1	716
Arabidopsis v10	AT2G37040.1	725	\| Symbols: PAL1, ATPAL1 \| PHE ammonia lyase 1 \| chr2:15557602-15560237 REVERSE LENGTH=725