barSeed - Barley Seed Development Database

Probe CUST_22967_PI390587928

Source Contig U35_15875

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22967_PI390587928	Hv_44K_v2	TACTGATTCATACACAAAAACTCTGAAGAAATGGCATGGCTGGCTCGCCAGCTCCAGTTT	549	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13139.1	3039	2e-24	438 - 497	100	60 / 60	minus	ABC00036 ABC04409
MLOC	MLOC_13138.1	4472	2e-24	1738 - 1797	100	60 / 60	minus	ABC00036 ABC00166 ABC04409
JLOC1	JLOC1_8862.1	1427	8e-25	654 - 713	100	60 / 60	plus
Harvest21	ABC04409	1190	3e-25	583 - 642	100	60 / 60	plus	ABC04409
Harvest21	ABC04408	612	3e-25	550 - 609	100	60 / 60	plus
Harvest35	U35_15876	1194	3e-25	583 - 642	100	60 / 60	plus
Harvest35	U35_15875	613	3e-25	550 - 609	100	60 / 60	plus

Contig Sequence (613 bp)

>U35_15875 613 Hv_44K_v2
CTTCTTCCTCCCCCACATCGCACTTCCTCCCCTGCTAGATTCCTCCCTCCGCCGACCGGC
AGGGCCTCTCTCCTGCAGTTCCCTCGCCCAAGTTCGCACGAGAGAAGGCCAAAAGCACCG
CAGTTTGCGAGATCGTGGAGCGGTGAGTTTACTAGCTGCGCTGTAGGGGGAGATGGCAGA
GACGGTATTCAGCCCGTGTTTGGAAGGGATGAACCATGTCAGGTCGGACAGCGGGGTCAT
GCTGTCCAAGCCCTTCCTTGATGTCTGCAAGCAAATCTTACCTGTCTTGGATAAATTTGG
TGCTGCTATGGCAATTGTGAAGAGTGATATTGGAGGAAATATCACGAGGTTGGAGAACAA
GTACTCTTCAGACCCAGCAAAATATGAGCACTTGTACACCATGGTCCAAGAAGAAGTTGA
AAAGAAGACCGCAAAAGGTTCATCAAGCTGCACCAATGGACTTCTATGGCTCACGAGGGC
CATGGACTTCCTTGTTGAACTGTTCCGTAATCTGCTTGACCATCCAGACTGGACTATGAG
TCAAGCATGTACTGATTCATACACAAAAACTCTGAAGAAATGGCATGGCTGGCTCGCCAG
CTCCAGTTTTACG

Homology of Contig U35_15875 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g26460.1	203	3e-78	protein\|GLTP domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g49120.1	203	2e-98
Arabidopsis v10	AT2G33470.1	202	4e-80	\| Symbols: GLTP1, ATGLTP1 \| glycolipid transfer protein 1 \| chr2:14176599-14177950 REVERSE LENGTH=202