barSeed - Barley Seed Development Database

Probe CUST_226_PI390587928

Source Contig U35_44037

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_226_PI390587928	Hv_44K_v2	AAGCAAGCAGCAAGTGAACCAACGTGCATGAATGTGATTGGGGCTGACTATGTCATACTT	220	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70817.1	4158	2e-24	1584 - 1643	100	60 / 60	minus	ABC01013 ABC01019
Harvest21	ABC41452	440	3e-25	221 - 280	100	60 / 60	plus
Harvest35	U35_44037	440	3e-25	221 - 280	100	60 / 60	plus

Contig Sequence (440 bp)

>U35_44037 440 Hv_44K_v2
TTGAGTAGGGTCCTAGGCCCCCACTCTCTTCAACACGGGCCCACCACTTCTGGTATTGTA
CCTTTGACCTTCCGCCCCTGTTCATCAGCTGGAGCTTTTGGATGGACTAATTAATTCTAT
ATATATGCGGATGCAATTGAATAGGGAGTGAAGTCTGGAACTGCCCAAATGAAGGGTTGA
TATCTGCAAATTAAGCGTTCATCGTGGCAATTGCTATTGAAAGCAAGCAGCAAGTGAACC
AACGTGCATGAATGTGATTGGGGCTGACTATGTCATACTTGTGCAGGCGTCGACCCCGAC
CATCTTCCTGGGCAAGAAGGTGAAGAACTACTACCATGGTGGCAACAAGATGAAGAGCAG
GGTGGTGAGGGTCATGGCGGCCAAAAAGGAACTTGACCAGGGCAAGCAGACCGATGCGGA
CCGGTGGAAGGGTCTGGCCT

Homology of Contig U35_44037 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None