barSeed - Barley Seed Development Database

Probe CUST_22652_PI390587928

Source Contig U35_26190

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22652_PI390587928	Hv_44K_v2	GAAACTTCACCGGATGTGTTTCTTAAAACGCAAATAAGACTCATACTTAACCATGTGTAT	891	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248951.1	1079	7e-23	939 - 999	98	60 / 61	plus	ABC02384 ABC25624
JLOC1	JLOC1_26431.1	729	4e-23	650 - 710	98	60 / 61	plus
Harvest21	ABC25624	951	3e-25	1 - 60	100	60 / 60	minus	ABC25624
Harvest35	U35_26190	951	3e-25	892 - 951	100	60 / 60	plus

Contig Sequence (951 bp)

>U35_26190 951 Hv_44K_v2
GCGCCCGCGGCTACGCTGTAAACGCCACCGTCCGCGACCCATGTGATCCAAAGAATGCAT
GTCTCAAACAGCTAGATATGGCCCCGGAAAATCTCCAGTTGTTCAAGGCAGACATGCTTG
ACTACGACATGGTGGCAACTGCATTTGTCGGGTGTGAGGGTGTCTTCCATCTGGCCTCTC
CAGTTCCCATAGACAAGATGGTTGATAAAGAGATATGGTATGCTCTTGCCAAGATGGAAG
CTGAAGAGATGGCCCTAGAATACGCGGACAAAAATGGATTACACGTCGTTACATTTTGCT
CTGGTGCAGTCTTTGGCCCTCTGTTACAGGCTGATGTGCTCAATATCACCACCAAATTCC
TCCGCTATATCATAAAAGGAGGTCCTGACACAATAAATAACAAATTCTGGCCCATAGTAG
ACGTTCGCGATGTCGCTGACGCACTACTCCTGTTATACAACAAGGCAAAACCATGTCAGA
GGTACATATGTTCAGAACACCAAATCGACATAAAAGATTTGGTGGATTTGATGAAGAGCA
TGTACCCCAGCTATAACTATGTAGACAAGTAAGTCATATCAGCATACTTTCATATTTGCG
GTTATCGTTTCCACCGGATTTTCATCATTTTTGTTTTGTTTAGACTGGTTGAGGTGGATT
ATAAGGTCGGGATGAATTCAGATAAACTTAAGAATCTAGGATGGAAACCGAGGAAGTTGG
AGGAGACGCTTGCAGATAGCATCGAGTCATACGAGAAATCAGGAATCCTTAATGCGGAGG
AGGAACCGTGTCGCGTTCCTTATTTCTACCGCATGCCACCTGTTCTGGAGTGAATGGACA
CTGTTGTTCACCTACTGTTGTGGCATGGTTTCTGCATTTTGCTTGAAAGTTGAAACTTCA
CCGGATGTGTTTCTTAAAACGCAAATAAGACTCATACTTAACCATGTGTAT

Homology of Contig U35_26190 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g31490.1	344	2e-76	protein\|reductase, putative, expressed
Brachypodium v1_2	Bradi2g11337.1	342	2e-100
Arabidopsis v10	None