barSeed - Barley Seed Development Database

Probe CUST_22124_PI390587928

Source Contig U35_14759

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22124_PI390587928	Hv_44K_v2	GCTCAACCTCCTAAACATTTCCATTCTCTGGGTTAAAAGATCTCCTTATCACTTAAAAAA	548	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59320.1	747	9e-22	3 - 57	100	55 / 55	minus	ABC01908 ABC01909 ABC01910
JLOC1	JLOC1_38597.1	825	5e-22	664 - 718	100	55 / 55	plus
Harvest21	ABC01908	731	3e-25	549 - 608	100	60 / 60	plus	ABC01908
Harvest21	ABC32190	642	1e-23	572 - 631	98	59 / 60	plus
Harvest35	U35_14759	619	3e-25	549 - 608	100	60 / 60	plus
Harvest35	U35_46919	527	2e-22	131 - 185	100	55 / 55	minus

Contig Sequence (619 bp)

>U35_14759 619 Hv_44K_v2
CGCGCCGCCGCTCGGAGCAAGCGCCGCAGGGGACGCCGACATGTCGAAGCGCGGGAGGGG
AGGATCGGCGGGGAACAAGTTCCGGATGTCGCTGGGTCTGCCGGTGGCAGCGACGGTGAA
CTGCGCCGACAACACGGGCGCCAAGAACCTGTACATCATCTCCGTGAAGGGCATCAAGGG
AAGGCTAAACCGCCTGCCGTCGGCCTGCGTCGGCGACATGGTCATGGCCACCGTCAAGAA
GGGGAAGCCCGACCTCAGGAAGAAGGTCATGCCGGCTGTCATCGTGCGCCAGCGCAAGCC
ATGGCGCCGAAAGGACGGTGTCTTCATGTACTTCGAAGATAATGCTGGGGTGATTGTGAA
CCCTAAGGGTGAGATGAAAGGATCTGCTATCACAGGACCCATTGGTAAGGAGTGTGCTGA
CCTCTGGCCTAGGATCGCTAGCGCCGCAAATGCCATTGTCTGAGGAGCTTGTTTGGGATA
ATGATATGTTTCCTTAGTTTCAGTTTTGTACCTGAATTATTTGATTGCCAGATATTTATC
CGAATGAGGCTCAACCTCCTAAACATTTCCATTCTCTGGGTTAAAAGATCTCCTTATCAC
TTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14759 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g32920.1	141	4e-97	protein\|ribosomal protein, putative, expressed
Brachypodium v1_2	Bradi3g55140.1	141	7e-98
Arabidopsis v10	AT3G04400.1	140	2e-96	\| Symbols: emb2171 \| Ribosomal protein L14p/L23e family protein \| chr3:1167339-1168308 FORWARD LENGTH=140