barSeed - Barley Seed Development Database

Probe CUST_22105_PI390587928

Source Contig U35_14760

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22105_PI390587928	Hv_44K_v2	GTGGCATGTGTCCAAAAATTTCTAAGCATATTGAGCTGCAAATATGCAGATGGCATGAAA	754	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.488	1.334	1.046	0.902	0.347	0.415
Raw	3018.710	4225.543	2903.943	3971.657	534.325	698.137

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36471.1	1286	2e-24	1180 - 1239	100	60 / 60	plus	ABC01908 ABC01909 ABC01910 ABC34657 ABC35120
JLOC1	JLOC1_23486.1	1050	8e-25	918 - 977	100	60 / 60	plus
Harvest21	ABC01909	872	3e-25	742 - 801	100	60 / 60	plus	ABC01909
Harvest35	U35_14760	885	3e-25	755 - 814	100	60 / 60	plus

Contig Sequence (885 bp)

>U35_14760 885 Hv_44K_v2
CCGCCGCCGGGTACCGCCCCCTCTTTCCAAGATGTCGAAGCGAGGGCGTGGAGGTTCCGC
TGGAAACAAGTTCCGGATGTCGCTGGGTCTGCCGGTGGCAGCCACTGTGAACTGTGCTGA
CAACACTGGTGCCAAGAACCTCTACATCATCTCCGTGAAGGGAATCAAGGGTCGTCTGAA
CAGGCTTCCTTCTGCCTGTGTTGGTGACATGGTTATGGCCACTGTCAAGAAGGGAAAGCC
TGACCTGAGGAAGAAGGTCATGCCGGCTGTCATCGTGAGGCAGCGCAAGCCATGGCGCCG
AAAGGACGGAGTCTTCATGTACTTTGAAGACAATGCTGGAGTCATTGTGAACCCAAAGGG
AGAGATGAAAGGTTCTGCCATCACCGGACCCATCGGGAAGGAGTGTGCCGACCTGTGGCC
CAGGATTGCCAGCGCAGCAAACGCCATTGTCTGATCACTGGAGCAGCTAGATGATCAAAG
CTTTGATAGCATGTCCCTCTTTTCTTCTAGTTTATTATTACTTGTGGCACTTGAGGATGA
GTTTCCTGGATTATGTAATGCTGCTGGATTATGGCCTGCTAGCTTTCGTAAGATTTTGCA
CTGTGGTTTTGGCTACTGAGATTTGGCGTGTTCGAACCTGAAAGAGCTTTTGATCGAAAT
TTATCTCTGTTGTGGCAAAAAAAAAAAAAAAAAATTCACCTTCGAAGTCTGGCTTGGATG
TTAATTAGTCTATTGATAAGTGTGCTAGCTTTTGGTGGCATGTGTCCAAAAATTTCTAAG
CATATTGAGCTGCAAATATGCAGATGGCATGAAAAAAAAAGAGCACAGTTCTGAAGAATG
TTTTGTCCTTTCAATGTAGCAATAATAATTTTCAGATTTTTTGTT

Homology of Contig U35_14760 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g32920.1	141	1e-95	protein\|ribosomal protein, putative, expressed
Brachypodium v1_2	Bradi3g55140.1	141	2e-96
Arabidopsis v10	AT3G04400.1	140	5e-95	\| Symbols: emb2171 \| Ribosomal protein L14p/L23e family protein \| chr3:1167339-1168308 FORWARD LENGTH=140