- Probe CUST_22052_PI390587928
- Source Contig U35_14781
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22052_PI390587928 | Hv_44K_v2 | AGACGGTGATCATTACCGACATGAACTACTACCCGGTGGCGCCCTACCACTTCGACCTCA | 410 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.933 | 0.923 | 1.637 | 1.440 | 0.528 | 0.596 |
| Raw | 206.165 | 322.692 | 493.925 | 652.947 | 90.322 | 110.540 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_12906.3 | 1315 | 7e-23 | 421 - 480 | 98 | 59 / 60 | plus | ABC02873 ABC02876 ABC02877 |
| MLOC | MLOC_12906.2 | 1770 | 7e-23 | 941 - 1000 | 98 | 59 / 60 | plus | ABC02873 ABC02876 ABC02877 |
| MLOC | MLOC_12906.1 | 1644 | 7e-23 | 728 - 787 | 98 | 59 / 60 | plus | ABC02873 ABC02876 ABC02877 |
| JLOC1 | JLOC1_8688.2 | 1737 | 4e-23 | 715 - 774 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_8688.1 | 1587 | 4e-23 | 565 - 624 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC02875 | 581 | 3e-25 | 411 - 470 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC02873 | 1283 | 1e-23 | 405 - 464 | 98 | 59 / 60 | plus | ABC02873 |
| Harvest35 | U35_14781 | 582 | 3e-25 | 411 - 470 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14784 | 1355 | 1e-23 | 448 - 507 | 98 | 59 / 60 | plus |
Contig Sequence (582 bp)
>U35_14781 582 Hv_44K_v2 CCGCACTGCCCACTCGTCAGATCCGCACACACACACACACACCACAGCGCGCGGCATGGG CTCCCTCCCCTCCCTCGCCGTGCTCGCGGCGCTTCTCTGCTTCCTGGCCGTCGGCGGCGC CGTGGACCTTAACGCCACCGACGCCTCCCCCTTCGACGTCGACCTCAACGTCACCGACGC CACCAAGTACTGGGGCCCCTGGACCCCGGCCAGGGCGACCTGGTATGGCCAGCCCAATGG CGCCGGCCCCGACGACAACGGTGGTGCCTGCGGCTTCAAGCACACCAACCAGTACCCGTT CGCGTCCATGACCTCCTGCGGCAACCAGCCATTGTTCAAGGACGGCAAGGGATGCGGCTC ATGCTACAAGATCAGATGCAGGAAGGACCAATCCTGCTCCGGCAGGACGGAGACGGTGAT CATTACCGACATGAACTACTACCCGGTGGCGCCCTACCACTTCGACCTCAGCGGCACGGC GTTCGGCAGGCTCGCAAAGCCCGGGCTCAACGACAGGCTCCGCCACTCCGGCATCATCGA CATCGAGTTCACACGGGTGCCGTGCGAGTTCCCGGGGCTCAA
Homology of Contig U35_14781 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os10g40730.1 | 287 | 2e-100 | protein|expansin precursor, putative, expressed |
| Brachypodium v1_2 | Bradi3g33160.1 | 285 | 5e-104 | |
| Arabidopsis v10 | None |