- Probe CUST_22051_PI390587928
- Source Contig U35_14782
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22051_PI390587928 | Hv_44K_v2 | CCACTCTCGCCTTTTATAATTTATATAGTATCATTCAAGGCGGTGATATTAATCGAAGAG | 29 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.483 | 1.547 | 1.067 | 0.956 | 0.293 | 0.327 |
| Raw | 893.972 | 922.132 | 545.613 | 790.534 | 83.904 | 101.523 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_12906.3 | 1315 | 7e-23 | 1205 - 1261 | 100 | 57 / 57 | plus | ABC02873 ABC02876 ABC02877 |
| MLOC | MLOC_12906.1 | 1644 | 7e-23 | 1518 - 1574 | 100 | 57 / 57 | plus | ABC02873 ABC02876 ABC02877 |
| JLOC1 | JLOC1_8688.2 | 1737 | 4e-23 | 1505 - 1561 | 100 | 57 / 57 | plus | |
| JLOC1 | JLOC1_8688.1 | 1587 | 4e-23 | 1355 - 1411 | 100 | 57 / 57 | plus | |
| Harvest21 | ABC02874 | 559 | 1e-23 | 469 - 525 | 100 | 57 / 57 | plus | |
| Harvest21 | ABC02873 | 1283 | 1e-23 | 1195 - 1251 | 100 | 57 / 57 | plus | ABC02873 |
| Harvest35 | U35_14782 | 664 | 3e-25 | 30 - 89 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_14784 | 1355 | 1e-23 | 1232 - 1288 | 100 | 57 / 57 | plus |
Contig Sequence (664 bp)
>U35_14782 664 Hv_44K_v2 TTTTTTTTTTTTTTAGTAGTAACAATATACTCTTCGATTAATATCACCGCCTTGAATGAT ACTATATAAATTATAAAAGGCGAGAGTGGGCGGGAGAGCGTATCTTGTACGCCTGCCTCC TCCATTTTCCCACACAGCCCTTTTCCCATTTGCCAATACACGACTCATCTCTCACTTCCC TACAGACCGAGACCCGACTCCACGGACGCACCCGCACCCGCACCCGCACCCAACCAAACC TTTTTCTCACCTAGAAAGACGCACCGACACCACACACCCACCCAACCAGATACAGTTTAC AACGACTCAGCGCGACGCAAGGACGGACCGTACACTCCCAATGACTTGACCGTAGCAGCT AGCTGCGTAGTAGCATTACCAGTACTCGGGTAAAGGGACTTCAGCTGTACTGCACGAAGG AGCGGTAGAAGGTGTTGGGCCTCCAGTTGGCCGGGATGACCTTGTTGGCGACGAGCGTCT TGCCGGACTCGTTGCGGATGCGGATGGAGAATGGCGCCTGGAGGCGGTGGTTGGAGTCNA GGCGCCAGACGGAGCCCCACGACTCCCTCATCCTCGTCCACTTTCCGCCGCCCGGCCCCC GCGACTCCATGAAGTCCACCTGCACCACGTCGCCGTCGCCGTCCTCGTACTCCACCAGCA CCGC
Homology of Contig U35_14782 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |