barSeed - Barley Seed Development Database

Probe CUST_22023_PI390587928

Source Contig U35_14794

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22023_PI390587928	Hv_44K_v2	CACTGTATCCTTGTATTTTCACTTCTTCAGTAATGCAGTCGTCTTGTGTGTCCTAAAAAA	646	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375664	716	3e-21	655 - 708	100	54 / 54	plus	ABC01830 ABC01832 ABC01834 ABC01837 ABC01838 ABC01839 ABC44140
MLOC	MLOC_28646.1	413	3e-21	355 - 408	100	54 / 54	plus	ABC01832 ABC44140
JLOC1	JLOC1_19180.1	412	6e-21	360 - 412	100	53 / 53	plus
Harvest21	ABC01832	718	1e-23	647 - 706	98	59 / 60	plus	ABC01832
Harvest21	ABC29096	111	6e-22	33 - 86	100	54 / 54	plus
Harvest35	U35_14794	719	3e-25	647 - 706	100	60 / 60	plus

Contig Sequence (719 bp)

>U35_14794 719 Hv_44K_v2
GCACAGGATCAACTACAACAACCGTACCAAGCTGAAGCAGCACAGCACACACGTTTCCTT
CCAGCTGAGGTTAAAGTAGCCAGGCCAGCCCAGGCAGAAAGAGAGTGATGGCTTCCGGTC
AGCAGGAGAGGTCGCAGCTGGACCGCAAGGCCCGCGAGGGTGAGACCGTCGTCCCCGGCG
GCACCGGTGGGAAGAGCCTCGAGGCGCAGCAGAACCTCGCCGAAGGGCGCAGCCGTGGCG
GGCAGACTCGCAGGGAGCAGATGGGGGAGGAGGGGTACAGCGAGATGGGGCGCAAGGGCG
GGCTGAGCACCAACGATGAGTCCGGCGGCGAGCGCGCCGCCAGGGAGGGCATCGACATCG
ACGAGTCCAAGTTCAAGACCAAGTCCTAGATGTCGCCTAGCAAGCAAGACGACTGCTTAA
TTAGGTTGGGGTGGGGTGTCAGTTAACCTTGCCGGATGAATAATGTAGGTCAGGAGTCCT
GACGTAAGCACGCATGTAGGCGATCGTACGTAGTATGATCATGTGTGCTCGTAGCTGGTA
GTCCGTAGGCTCTGATGGTCAGTCGCGTAGGGTAATCAGTCAGGTGTCCGTGTCGGTCGG
GAGGTGTGGTGGTGGGCTGGTCGGCAGCTCGTCCCAAACCAGTTTACACTGTATCCTTGT
ATTTTCACTTCTTCAGTAATGCAGTCGTCTTGTGTGTCCTAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14794 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None