barSeed - Barley Seed Development Database

Probe ABC01839

Source Contig ABC01839

barSeed

Links

Affymetrix Source Sequence (1922 bp)

>ABC01839 1922
AAGCTTTACTTAAACATTTAAAATATTCTTGAAGTTTCAATCGATCCGTAAACAATTCAA
ATACCAAAAGGTGCAACTTCCATGTTTTTGAGACTTCACAGGACTTTGATCGATTGAGAA
TTTGAGATAATCTGCATTCACAAATTGCAACTTGCACTAATTAGAGAAATCACTAAACTT
AAATCAGTTTTTACTAGACTTAAATGACCTCAGTACAGCGAGACACTGTAAAATTAAGCT
AATAGTTAGGGTTTTTTTATGGAGCCAACCCATTAAGATTTAAGCTAATAGTTAGGTTTC
TCGTGGAACCAATTCATTAAGATTTAAGTCTTAGATTTGATAGTGATGCTCGTATTTTTG
AATTTATTTTAGCCTTTTCAGCAGTGTTCCCTTTAGTGAGGAGGTATGGTTCTGCTGACT
AGATAAAACTGTCAATCCCAAAATGTTGTAGTTCTAGTATTCTTAGTAGGATATATGTGC
ATCCCTTCACTAAAAGTAAAAGTATGTATGTATGTATGTGATCATTTTGCGGTAGGACGG
ACATATGTTGTTATACCCTAGATCCGGACGGTAAAAAAAATAGATCCTGAAATTTCCGTA
CACTACTATTAGATCTAGATAAACTTTATCAAAAGGGTCGAAATATGAAATTTGTCCCCT
GGACGCAGCGGGGCGCGCCGCTTTATGGTGCGACCGGACGACAGCGCGGGACAACGCAGC
AGGCGTCCAAGCATTTTTGCCCATACAGGACGTTTCCACAGATAGCGATGGGCTTATACG
GCCTCGCTCACGTACATATGTCCATGCCCACGCACGCTCGGCTGGCGCCGCGGTACAGCA
TGTAGAGTCCATTGCTCGTAGTCTCTGACCGGCCGCCGAACACCCGAGCATGGCGAGCGC
GAGAACCATGATCCTAGCTACGTGTCACCAGGACGACAGCACAGGACGACTCACGAGTCG
CTAGCATTGGCAGCTCATCCAAAACCCTACATGTCGGTGCCCATGCAAGCTACCACATGT
CATCCCACCAGAGGCTTGCATGCACGACGCGTCTTGATACAACAGGAACATGGAGAGGTA
CACGCGCCGGCTCCTAGCCGTCCGAAGCTCCTCCTCGCCGGCTATATAATCTCGACGTCG
CTAGCCCCTCCGCCATCACCATCAGGCAATCACAGAGCACCACGAGCAGTAGCATACAAA
ACCCTACATCCACTTACTGTTTCCGTTTAGCTAGGTCCCAGGCAGCGCGCAATGGCTTCC
GGTCAGCAGGAGAGGTCGGAGCTGGACCGCATGGCCCGCGAGGGGGAGACCGTCGTCCCC
GGCGGCACCGGTGGGAAGACCCTCGAGGCGCAGGAGCACCTTGCCGAAGGGCGCAGCCGT
GGCGGCCAGACTCGCAAGGAGCAGCTGGGGGAGGAGGGGTACCGCGAGATGGGGCACAAG
GGCGGGGAGACTCGCAAGGAGCAGCTGGGGGAGGAGGGGTACCGCGAGATGGGGCACAAG
GGCGGCGAGACTCGCAAGGAGCAGCTGGGGGAGGAGGGCTACCGCGAGATGGGGCACAAG
GGCGGCGAGACTCGCAAGGAGCAGATGGGAGAGGAAGGCTACCGCGAGATGGGGCGCAAG
GGTGGGCTGAGCACCATGAATGAGTCCGGTGGCGAGCGCGCCGCCAGGGAGGGCATCGAC
ATCGACGAGTCCAAGTTCAAGACCAAGTCCTAAATGATGTATGCCAAGATGTCCCGTGCC
AGTAGCTAGCTACCGGTAGTAGCGAGCAAGCTGACTGCTGAATAAATGACGTAGGTCAAG
ATCAGGTCTTGACATAGGCGTGAGCACGCATGTAGGCGATCACATGTACTGTGATCATGT
GTGCTTTAGGTGTGTTAGCTTGTAGTAGGTTATCATGTGTGCTTAAGGTGTCCCAAGCTT
GT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_6278.1	810	1e-75	217 - 398	95	173 / 182	CUST_19742_PI390587928	ABC01830 ABC01832 ABC01834 ABC01838 ABC01839
AK375106	819	1e-145	227 - 695	88	414 / 473	None	ABC01830 ABC01832 ABC01838 ABC01839
MLOC_81254.1	245	6e-94	1 - 245	92	228 / 247	None	ABC01830 ABC01832 ABC01838 ABC01839
AK375664	716	2e-54	245 - 400	92	143 / 156	CUST_22023_PI390587928	ABC01830 ABC01832 ABC01834 ABC01837 ABC01838 ABC01839 ABC44140
MLOC_24874.2	780	1e-70	193 - 389	91	180 / 197	None	ABC01830 ABC01832 ABC01833 ABC01834 ABC01837 ABC01838 ABC01839
MLOC_23112.1	261	1e-56	115 - 259	94	137 / 145	None	ABC01830 ABC01832 ABC01837 ABC01838 ABC01839