barSeed - Barley Seed Development Database

Probe ABC01834

Source Contig ABC01834

barSeed

Links

Affymetrix Source Sequence (684 bp)

>ABC01834 684
GCAGCAGTTACATATACACCACACACGCATACACAAGTCAGCTTCAGGAACCTAGCGGTC
GAGCGCTTGTCGGCAATGGCGTCCGGTCAGGATAAGGGGAGGTCGGAGCTGGACAGCTTG
GCCCGCGAGGGGCAGACCGTCGTCCCTGGCGGCACCGGTGGGAAGAGCTACGAGGCGCAG
GAGAAACTCGCCGAAGGGCGCAGCCGCGGCGGGCAGACTCGCAGGGAGCAGATGGGGGAG
GAGGGGTACAGCGAGATGGGGCGCAAGGGCGGGCTGAGCACCAACGATGAGCCCGGCGGC
GAGCGCGCCGCCCGGGAGGGCATCGACATCGACGAGTCCAAGTTCAAGACCAAGTCCTAG
ACGTTCAGTTCAGTGCCTACTGCCTAGCTAGCTAGCAAAGCAGCTGACTGCTCGCTCGTG
TTTGGATGTAGTTCGTTTACTGTCAAGGTACTGAATAATGTAGGTCGTCAGGTACTCGGA
TCTTGATGTAATATGCATGTAGGTGATCATGTGTACCGCTCGTGTGTGCTTTCAAGTGTC
GCATCTAGCTTCTACCAGTAGCTAGTAGAGTAGAGGTGTCGTAAGTTGTGACCAAGCTAT
GGCGTTCTCTGTTATGTAGTGCGTGTGCTGTTATGAATCTGAATCTTCCGTCTTTGTGCG
ATGTTCTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_24978.1	424	0.0	1 - 424	100	424 / 424	None	ABC01830 ABC01832 ABC01834 ABC01837
AK375664	716	2e-114	116 - 398	93	266 / 286	CUST_22023_PI390587928	ABC01830 ABC01832 ABC01834 ABC01837 ABC01838 ABC01839 ABC44140
MLOC_24874.2	780	4e-96	193 - 478	89	257 / 289	None	ABC01830 ABC01832 ABC01833 ABC01834 ABC01837 ABC01838 ABC01839
MLOC_24977.1	197	3e-93	6 - 197	99	190 / 192	None	ABC01834
MLOC_6278.1	810	4e-51	397 - 548	91	138 / 152	CUST_19742_PI390587928	ABC01830 ABC01832 ABC01834 ABC01838 ABC01839