barSeed - Barley Seed Development Database

Probe CUST_21187_PI390587928

Source Contig U35_38812

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21187_PI390587928	Hv_44K_v2	CCATGTGATGCTTCACTTGTAGAGATTTTTGTCTCACTTCAAACTTAATGTTGATCACAT	293	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357364	2576	2e-24	2447 - 2506	100	60 / 60	plus	ABC15052 ABC15796 ABC34750 ABC43884
Harvest21	ABC34750	416	3e-25	294 - 353	100	60 / 60	plus	ABC34750
Harvest35	U35_38812	416	3e-25	294 - 353	100	60 / 60	plus

Contig Sequence (416 bp)

>U35_38812 416 Hv_44K_v2
GATCCAGCTCGCCACCCCCTAGATTTCGTTTACTACTTAGATTGCCGACTTCCTTCCTCT
ACCAGATCCTGCGCGGCATCGCCTACTGCCACTCGCACCACATGCTTCACACGGATGTTT
GCGGTTGCTATGACGCGGACAAGCTGTTGCTGCAGGTGGACGACTCCTCATGGTTGCTCA
ACCTATCTCTGCTACCCCCACACGTGATGCTAGCCTTCCATGTTTCTTCACAATCATCAG
GACAAAGAAGAAGAAGCATAGTTCAGTGGATCTAGTTCTCGGAGTAATGAAGCCCATGTG
ATGCTTCACTTGTAGAGATTTTTGTCTCACTTCAAACTTAATGTTGATCACATTTATATG
TGTTATATTATGTAAAAGATTGCCTTTTGCTGTTATTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_38812 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None