barSeed - Barley Seed Development Database

Probe CUST_21132_PI390587928

Source Contig U35_14881

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21132_PI390587928	Hv_44K_v2	CAGACTAGTAGTACCAGCCTGGCATTATGTTTGTCTTCGATGAACTGTTATTCCTTCAAA	511	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.194	1.106	1.100	0.968	0.551	0.505
Raw	55505.033	78198.233	69836.667	94838.800	19071.000	19409.133

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_12235.1	860	4e-23	573 - 629	100	57 / 57	plus
Harvest21	ABC01364	633	1e-23	512 - 568	100	57 / 57	plus	ABC01364
Harvest21	ABC01362	1192	1e-23	1064 - 1123	98	59 / 60	plus	ABC01362
Harvest21	ABC01365	1117	6e-22	71 - 127	98	56 / 57	minus
Harvest35	U35_14881	642	3e-25	512 - 571	100	60 / 60	plus
Harvest35	U35_37928	687	1e-23	37 - 93	100	57 / 57	minus

Contig Sequence (642 bp)

>U35_14881 642 Hv_44K_v2
GCTCGCACCCGCCGCCTCCTCGGATCGTCCCTGCCGGAGAGACGCCGGAGAGCGCGAGCA
AACCCTAGCCTCCCACGATGGTGCTGCAGAACGACATCGACCTGCTCAACCCGCCGGCCG
AGCTCGAGAAGCTCAAGCACAAGAAGAAGCGCCTCGTCCAGTCCCCCAACTCTTTCTTCA
TGGACGTCAAGTGCCAGGGTTGCTTCAACATCACTACTGTGTTCAGCCACTCCCAGACTG
TCGTGGTGTGCCCAGGCTGCCAAACAGTGCTCTGCCAGCCAACCGGTGGCAAGGCCAGGC
TAACTGAGGGCTGCTCCTTCCGCCGCAAGGGCGACTAAACCTTTGAAGGCTACCTAAAAA
AGCAAGCCATTGTTGAACTTTGAGTTTCTCCAGGGCGTTAGTCTGAAGATTTTGCATTGT
CGGCAAGTTGAACCCATCTTTGGTAATGTGATATCTAGCTTGAGTAATATTATGATGACC
ACTGTACTATGTTCCGTTTGGGTTGTGAGATCAGACTAGTAGTACCAGCCTGGCATTATG
TTTGTCTTCGATGAACTGTTATTCCTTCAAAAAAAAAAAAAAAAAGCTTTCTCTGCTATA
TGCTCTTGAATCTTTTATTGCTTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14881 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None