barSeed - Barley Seed Development Database

Probe CUST_21041_PI390587928

Source Contig U35_15457

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21041_PI390587928	Hv_44K_v2	GCATCCAGTTGTTCCTCTGTCCATTTTCGTCGTCCATGTACTTTGATGAATTAATTAATT	496	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357653	780	6e-24	703 - 761	100	59 / 59	plus	ABC03173 ABC03175 ABC03315 ABC37597
JLOC1	JLOC1_51710.1	1435	8e-25	747 - 806	100	60 / 60	plus
Harvest21	ABC03175	996	3e-25	883 - 942	100	60 / 60	plus	ABC03175
Harvest21	ABC03173	749	1e-24	651 - 709	100	59 / 59	plus	ABC03173
Harvest35	U35_15457	620	3e-25	497 - 556	100	60 / 60	plus
Harvest35	U35_39739	813	1e-24	45 - 103	100	59 / 59	minus
Harvest35	U35_15458	749	1e-24	651 - 709	100	59 / 59	plus

Contig Sequence (620 bp)

>U35_15457 620 Hv_44K_v2
CCATTACGGCCGGGGATCACTCTACTACTCCACCTCTAGCCGTCTCGCTCTCCTAGTTTC
TTCCATCAACCTCCTCTCCTCTCCTCTCCTCTCGCCTCGGGTTCTCCCTTCGACTGCTTC
GAGACAAGGAAGGAAGATGGCGGACGAGGGGACGGCCAACTGCATCGACATCATCCTCGC
CATCATCCTGCCGCCGCTCGGCGTCTTCTTCAAGTTCGCCTGCGGGATCGAGTTCTGGAT
CTGCCTGCTGCTCACCTTCTTCGGCTACCTCCCCGGCATCATCTACGCCGTCTGGGTCAT
CACCAAGTAGCCGCCCCTGCCTGCCTGCTTGTCTCTAGGTGATCCATGGCCAACTTGTTC
CGTTTGTCCGAGACGCGAGCCAGGTGATCCATGGTGCTGCGTACGCGTTGTGTGTTCATG
CTGTTGTACATCTGTTTGTTGTTCTTGCTTGATGATTAGACTCCTCTCCTCCTGTCGCCT
TCCCCAGTGTATCCATGCATCCAGTTGTTCCTCTGTCCATTTTCGTCGTCCATGTACTTT
GATGAATTAATTAATTAATCAATTGATTGGTGGAGAAAAAAAAAAAAAAAAACCGATTGT
TAAAAAAAAAGAAAAAAAAA

Homology of Contig U35_15457 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None