barSeed - Barley Seed Development Database

Probe CUST_21039_PI390587928

Source Contig U35_15458

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21039_PI390587928	Hv_44K_v2	CCAGTTGTTCCTCTGTCCATTTTCGTCGTCCATGTACTTTGATGAATTAATTAATTAATC	653	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357653	780	2e-24	706 - 765	100	60 / 60	plus	ABC03173 ABC03175 ABC03315 ABC37597
JLOC1	JLOC1_51710.1	1435	8e-25	751 - 810	100	60 / 60	plus
Harvest21	ABC03175	996	3e-25	887 - 946	100	60 / 60	plus	ABC03175
Harvest21	ABC03173	749	3e-25	654 - 713	100	60 / 60	plus	ABC03173
Harvest35	U35_39739	813	3e-25	41 - 100	100	60 / 60	minus
Harvest35	U35_15458	749	3e-25	654 - 713	100	60 / 60	plus
Harvest35	U35_15457	620	3e-25	501 - 560	100	60 / 60	plus

Contig Sequence (749 bp)

>U35_15458 749 Hv_44K_v2
TCCGATCCAACCCCCCTGTCTGGCGCTCGTGGGAGCATGAGCATCATCACCGCCGCACGA
GCCGGGCACGTAACGTAACCTCGCCAACCGGCGCCCTCGCCCCGCGTGGTGCCTCGCCGT
CTCTCTTTATAATCAGCAGGGGCGTCGCACCACCGCATCATCACTCTACTACTCCACCTC
TAGCCGTCTCGCTCTCCTAGTTTCTTCCATCAACCTCCTCTCCTCTCCTCTCCTCTCGCC
TCGGGTTCTCCCTTCGACTGCTTCGAGACAAGGAAGGAAGATGGCGGACGAGGGGACGGC
CAACTGCATCGACATCATCCTCGCCATCATCCTGCCGCCGCTCGGCGTCTTCTTCAAGTT
CGCCTGCGGGATCGAGTTCTGGATCTGCCTGCTGCTCACCTTCTTCGGCTACCTCCCCGG
CATCATCTACGCCGTCTGGGTCATCACCAAGTAGCCGCCCCTGCCTGCCTGCTTGTCTCT
AGGTGATCCATGGCCAACTTGTTCCGTTTGTCCGAGACGCGAGCCAGGTGATCCATGGTG
CTGCGTACGCGTTGTGTGTTCATGCTGTTGTACATCTGTTTGTTGTTCTTGCTTGATGAT
TAGACTCCTCTCCTCCTGTCACCTTCCCCAGTGTATGTGTATCCATAATCCATCCAGTTG
TTCCTCTGTCCATTTTCGTCGTCCATGTACTTTGATGAATTAATTAATTAATCAATTGAT
TGGTGGAGAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_15458 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None