barSeed - Barley Seed Development Database

Probe CUST_20959_PI390587928

Source Contig U35_27455

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20959_PI390587928	Hv_44K_v2	AATGATCCCAACGGGCCGCTGTACCACAACGGCATGTACCACTTCTTCTACCAGTACAAC	156	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80162.3	2053	2e-24	164 - 223	100	60 / 60	plus	ABC04470 ABC15050
MLOC	MLOC_80162.2	1948	7e-23	307 - 363	100	57 / 57	plus	ABC04470 ABC15050
MLOC	MLOC_80162.1	2157	7e-23	308 - 364	100	57 / 57	plus	ABC04470 ABC15050
JLOC1	JLOC1_53387.1	2099	8e-25	213 - 272	100	60 / 60	plus
Harvest21	ABC23859	512	3e-25	157 - 216	100	60 / 60	plus
Harvest35	U35_27455	513	3e-25	157 - 216	100	60 / 60	plus

Contig Sequence (513 bp)

>U35_27455 513 Hv_44K_v2
TTTGTCTCGTCTCCGTCTTCCCCTCCGATTGGCAAACCAACAACCATAGCTTTTGTCTTC
TCTCTGTCTTCTTCCCCGCTCCGCACCATGGATGGACTCGAGCACCCGCGCAATGGCCGG
ACAGCCTACCACTTCCAGCCGGCCAAGTTCTGGCAGAATGATCCCAACGGGCCGCTGTAC
CACAACGGCATGTACCACTTCTTCTACCAGTACAACCCCCATGGCGCCACCTGGGGCGAC
GGCACGCTCTCATGGGGCCACTCCGTCTCCGGCGACCTCGTGAACTGGGCCGACGTCGGC
AACGCGCTCGACCCCACCTCCCCGTTCGACGCCAACGGGTGCTGGTCGGGCTCCGCCACC
GTGCTCCCCGGCGGCCGCCCGGCCATCCTCTACACCGGCATCGACGCCAACAGGGTGCAG
GTGCAAAACGTGGCCTTCGCCAAGAACCCCGCCGACCCGCTCCTCCGCGAGTGGGAGAAG
CCCGACTGCAACCCGGTCATGCCCATGCCGGCG

Homology of Contig U35_27455 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g08072.1	596	2e-73	protein\|glycosyl hydrolases, putative, expressed
Brachypodium v1_2	Bradi4g07847.1	575	3e-82
Arabidopsis v10	AT1G55120.1	594	2e-53	\| Symbols: ATFRUCT5, AtcwINV3, FRUCT5 \| beta-fructofuranosidase 5 \| chr1:20566617-20569165 FORWARD LENGTH=594