- Probe CUST_20826_PI390587928
- Source Contig U35_47484
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_20826_PI390587928 | Hv_44K_v2 | TTGACATTGAGCGCCCAACATACACCAACCTCAACAGGCTTGTTTCTCAGGTCATATCAT | 601 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_7079.1 | 1740 | 2e-24 | 903 - 962 | 100 | 60 / 60 | plus | ABC00127 ABC00333 ABC00803 ABC00902 ABC48258 ABC50944 ABC52601 |
| MLOC | MLOC_69930.1 | 2090 | 3e-21 | 767 - 826 | 97 | 58 / 60 | minus | ABC00127 ABC00169 ABC00333 ABC00411 ABC00803 ABC00902 ABC50944 |
| MLOC | MLOC_69930.2 | 1479 | 3e-21 | 763 - 822 | 97 | 58 / 60 | minus | ABC00127 ABC00169 ABC00333 ABC00411 ABC00803 ABC00902 ABC50944 |
| JLOC1 | JLOC1_4669.1 | 2053 | 8e-25 | 907 - 966 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_46368.1 | 2257 | 2e-21 | 1066 - 1125 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC53205 | 393 | 3e-25 | 204 - 263 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC48591 | 674 | 3e-25 | 602 - 661 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00333 | 1756 | 3e-25 | 757 - 816 | 100 | 60 / 60 | plus | ABC00333 |
| Harvest21 | ABC50944 | 591 | 6e-22 | 429 - 488 | 97 | 58 / 60 | minus | ABC50944 |
| Harvest21 | ABC00089 | 1702 | 6e-22 | 802 - 861 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_47484 | 674 | 3e-25 | 602 - 661 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14084 | 1745 | 3e-25 | 782 - 841 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_49014 | 591 | 6e-22 | 429 - 488 | 97 | 58 / 60 | minus | |
| Harvest35 | U35_14073 | 1699 | 6e-22 | 802 - 861 | 97 | 58 / 60 | plus |
Contig Sequence (674 bp)
>U35_47484 674 Hv_44K_v2 GGGAAAGGCGTCTTCGTACTCGCCTCTCTCCGCGCACACGAGCTCTCGCCCCCTTCCTCC AACCCATCTCGCCAGCGGCGCAGCCCAACCACCCGCCACAATGAGGGAGTGCATCTCGAT CCACATCGGCCAGGCCGGCATCCAGGTCGGAAACGCGTGCTGGGAGCTCTACTGCCTCGA GCATGGCATTCAGCCTGATGGTCAGATGCCCGGTGACAAGACCGTTGGGGGAGGTGATGA TGCTTTCAACACCTTCTTCAGCGAGACTGGTGCTGGGAAGCACGTCCCCCGTGCAGTCTT TGTTGATCTTGAGCCTACTGTGATTGATGAGGTGAGGACTGGTGCTTACCGCCAGCTCTT CCACCCTGAGCAGCTTATCAGTGGCAAGGAGGATGCAGCCAACAACTTCGCCCGTGGTCA TTACACCATTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGTATCAGGAAGCTGTCCGA CAACTGCACTGGTCTCCAGGGCTTCCTTGTCTTCAATGCTGNTGGAGGTGGAACTGGCTC TGGCCTTGGTTCTCTATCCTGCTTGACAATGAGGCCATCTATGACATCTGCCGCCGCTCC CTTGACATTGAGCGCCCAACATACACCAACCTCAACAGGCTTGTTTCTCAGGTCATATCA TCACTGACTGCTTC
Homology of Contig U35_47484 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os11g14220.1 | 452 | 8e-96 | protein|tubulin/FtsZ domain containing protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g10150.1 | 452 | 3e-95 | |
| Arabidopsis v10 | AT4G14960.2 | 450 | 1e-96 | | Symbols: TUA6 | Tubulin/FtsZ family protein | chr4:8548769-8550319 REVERSE LENGTH=450 |