barSeed - Barley Seed Development Database

Probe CUST_20719_PI390587928

Source Contig U35_11371

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20719_PI390587928	Hv_44K_v2	AAGAGGTTCTACACGGGAAGCTCGACTTCGAGTCAGATCCATGGCCCAGCATCTCCGAAG	690	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55774.4	3233	2e-24	2080 - 2139	100	60 / 60	plus	ABC04589 ABC06447 ABC16998
MLOC	MLOC_55774.5	3232	2e-24	2079 - 2138	100	60 / 60	plus	ABC04589 ABC06447 ABC16998
MLOC	MLOC_55774.2	5732	2e-24	4695 - 4754	100	60 / 60	plus	ABC16584 ABC16998
MLOC	MLOC_55774.3	3705	2e-24	2410 - 2469	100	60 / 60	plus	ABC04589 ABC06447 ABC16998
JLOC1	JLOC1_36017.1	3666	8e-25	2260 - 2319	100	60 / 60	plus
Harvest21	ABC25101	816	3e-25	691 - 750	100	60 / 60	plus
Harvest35	U35_11371	817	3e-25	691 - 750	100	60 / 60	plus

Contig Sequence (817 bp)

>U35_11371 817 Hv_44K_v2
GCGCGGGGCTCCTGGTCGGCTCCGTGCTCAAGCGCAAGACGGAGAGCGTCAAGGAGAAGT
ACAGCCTGGGGCGGCGGCTGGGACAGGGCCAGTTCGGCACCACCTACCTGTGCGTGGAGC
GGAGCAGCGGCAAGGAGTACGCCTGCAAGTCCATCCTCAAGCGCAAGCTCGTCACCGACG
ACGACGTGGAGGACGTGCGCCGGGAGATCCAGATAATGTACCACCTCGCCGGCCACCCCA
ACGTCATCTCCATCCGGGGCGCCTACGAGGACGCCGTCGCCGTGCACCTCGTCATGGAGC
TCTGCGCCGGCGGCGAGCTCTTCGACAGGATCGTGCAGAAGGGACACTACACCGAGCGCA
AAGCCGCCGAGCTCGCCAGGGTCATCGTCGGCGTCGTCGAGGTCTGCCACTCCATGGGGG
TCATGCACCGGGACCTCAAGCCCGAGAACTTCCTCTTCGTCGACCAGACGGAGGAGGCCG
CGCTCAAGACCATCGACTTTGGTCTCTCCGTCTTCTTCCGGCCTGGTCAAATATTCACCG
ACGTTGTCGGAAGCCCTTACTATGTCGCGCCGGAAGTCTTGAAGAAGAAATATGGCCCCG
AGGCAGATGTCTGGAGCGCCGGTGTGATCATCTACATTCTGTTGTGCGGTGTGCCGCCAT
TTTGGGCAGAGAACGAGCAGGGCATATTCGAAGAGGTTCTACACGGGAAGCTCGACTTCG
AGTCAGATCCATGGCCCAGCATCTCCGAAGGGGCNCAAGATCTCGTGAGGAGAATGCTCC
TTANGGACCCCAAGAAAAGACTGACAGCCCATGAAGT

Homology of Contig U35_11371 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g57450.1	600	3e-175	protein\|CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi1g06300.1	624	1e-177
Arabidopsis v10	AT5G04870.1	610	3e-152	\| Symbols: CPK1, ATCPK1 \| calcium dependent protein kinase 1 \| chr5:1417015-1419877 REVERSE LENGTH=610