barSeed - Barley Seed Development Database

Probe CUST_20546_PI390587928

Source Contig U35_15062

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20546_PI390587928	Hv_44K_v2	AGCGCAAGCGCTGATATGTTGTTGAAACAACACTTGTTCAGAAACAAAAGAGAATAATGA	619	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362724	1471	2e-24	1372 - 1431	100	60 / 60	plus	ABC02680 ABC02681 ABC02683
MLOC	MLOC_63917.1	4539	2e-24	1246 - 1305	100	60 / 60	plus	ABC02683
MLOC	MLOC_63916.5	1346	2e-24	1248 - 1307	100	60 / 60	plus	ABC02683
MLOC	MLOC_63916.1	4036	2e-24	1450 - 1509	100	60 / 60	plus	ABC02680 ABC02681 ABC02683
JLOC1	JLOC1_41917.1	1623	8e-25	1450 - 1509	100	60 / 60	plus
Harvest21	ABC02683	1384	3e-25	1314 - 1373	100	60 / 60	plus	ABC02683
Harvest21	ABC02682	701	1e-23	70 - 129	98	59 / 60	minus
Harvest35	U35_15062	690	3e-25	620 - 679	100	60 / 60	plus
Harvest35	U35_15064	496	1e-23	368 - 427	98	59 / 60	plus

Contig Sequence (690 bp)

>U35_15062 690 Hv_44K_v2
GCCAGCTTATCCTACACCANAATGTCACAGGAAATGCAAGGTGGAGAACCAAGTGTGGAA
GAAAAATAAGCATTTCAGTGTTAACGCGTACAGAGTACATTCTAATCCCCATGACATCAT
GGCAGAGGTCTACAAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGGACTTTGC
ACACTACAAGTCAGGAGTATACAAGCACATCACCGGTGGCGTGATGGGAGGTCACGCTGT
CAAGTTGATTGGTTGGGGAACCAGTGATGCCGGCGAGGATTACTGGCTTCTTGCAAACCA
GTGGAACAGAGGATGGGGTGATGACGGATACTTCAAGATCATAAGGGGCAAGAATGAATG
TGGCATCGAAGAAGATGTTACTGCCGGCATGCCCTCGACAAAGAACATGGACAGAAACAA
CGATGTCGCCTTTGGAACCGCCATACTTTGAGCAGCGCCTTGGTCACAAACGCAGTTGAA
ATTAGCTGTTTGAATGTAAAATGAAGCCCATAAATTAGCTGTTTGAATGTAAAATGAAGC
CCATAAATTATCTGTTTGAATGTAAAATGAAGCCCGTAAAATAGATTTGATGGCTCCAGG
ATTCTGTACTCTGTACACTAGCGCAAGCGCTGATATGTTGTTGAAACAACACTTGTTCAG
AAACAAAAGAGAATAATGATAGTATCAATA

Homology of Contig U35_15062 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g24550.5	359	2e-94	protein\|Papain family cysteine protease domain containing protein, expressed
Brachypodium v1_2	Bradi1g09737.1	352	5e-99
Arabidopsis v10	AT1G02305.1	362	3e-76	Cysteine proteinases superfamily protein \| chr1:455816-457974 FORWARD LENGTH=362