barSeed - Barley Seed Development Database

Probe CUST_20545_PI390587928

Source Contig U35_15063

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20545_PI390587928	Hv_44K_v2	TCCGCATGACATCATGGCAGAGGTCTACAAGAATGGCCCTGTAGAAGTTTCTTTCATAAT	229	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368614	1477	2e-24	964 - 1023	100	60 / 60	plus	ABC02680 ABC02681 ABC02683
MLOC	AK358907	1478	2e-24	835 - 894	100	60 / 60	plus	ABC02680 ABC02681 ABC02683
MLOC	MLOC_15279.1	1158	2e-24	1089 - 1148	100	60 / 60	plus	ABC02680 ABC02681 ABC02683
JLOC1	JLOC1_10475.1	1171	8e-25	1098 - 1157	100	60 / 60	plus
Harvest21	ABC02681	612	3e-25	413 - 472	100	60 / 60	minus	ABC02681
Harvest35	U35_15063	701	3e-25	230 - 289	100	60 / 60	plus

Contig Sequence (701 bp)

>U35_15063 701 Hv_44K_v2
GTGGCGATGGTTGTGATGGAGGATATCCTATCTTCGCATGGCAATACTTCGTCGAGAACG
GTGTTGTTACTGACGAGTGCGATCCATTTTTGATCAGGGTTGGTTGCCAGCATCCTGGAT
GTGAACCTGCTTATCCTACACCTGTGTGTGAAAAGAAATGCAAGGTGCAGAACCAAGTTT
GGGAGGAAAAGAAACATTTCAGCATCGATGCATACCAAGTAAACTCTGATCCGCATGACA
TCATGGCAGAGGTCTACAAGAATGGCCCTGTAGAAGTTTCTTTCATAATTTATGAGGACT
TTGCACACTACAAGTCAGGTGTTTACAAGCAAATCACTGGTAGGATGGTGGGAGGTCATG
CCGCCAAATTGATTGGATGGGGAACAAGTGATGCTGGCGAGGATTACTGGCTTCTTGCAA
ATCAGTGGAACAGAGGATGGGGCGATGACGGGTACTTCAAGATCATAAGGGGCACAAATG
AATGTGGCATTGAAGGAGATGTTAATGCCGGTATGCCCTCGACAAAGAACATTGCGGGTA
GGGCCTTTGCAATTTGACGTTTGGGCAGCGCCTTTCCTCTGATGTAGTTGGAATTAGCTA
TTTTCCTGTCAAATAAAGAGCCTCTTTGATTCAAAGGATTTTTATAGAATTGAAATCCTT
TGTAATTTTTCCTATGTAGGCCGTTTGATTAGTAGAATTGT

Homology of Contig U35_15063 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g24550.5	359	1e-119	protein\|Papain family cysteine protease domain containing protein, expressed
Brachypodium v1_2	Bradi1g09730.4	336	9e-118
Arabidopsis v10	AT4G01610.1	359	3e-101	Cysteine proteinases superfamily protein \| chr4:694857-696937 FORWARD LENGTH=359