barSeed - Barley Seed Development Database

Probe CUST_20544_PI390587928

Source Contig U35_15064

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20544_PI390587928	Hv_44K_v2	CGCAAGCGCTGATATGTTGTTGAAACAACACTTGTTCAGAAACAAAAGAGAATGATGATA	369	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.485	2.953	1.117	0.919	0.809	0.761
Raw	38.697	39.769	12.978	16.227	2.752	3.864

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362724	1471	7e-23	1374 - 1433	98	59 / 60	plus	ABC02680 ABC02681 ABC02683
MLOC	MLOC_63917.1	4539	7e-23	1248 - 1307	98	59 / 60	plus	ABC02683
MLOC	MLOC_63916.5	1346	7e-23	1250 - 1309	98	59 / 60	plus	ABC02683
MLOC	MLOC_63916.1	4036	7e-23	1452 - 1511	98	59 / 60	plus	ABC02680 ABC02681 ABC02683
JLOC1	JLOC1_41917.1	1623	4e-23	1452 - 1511	98	59 / 60	plus
Harvest21	ABC02682	701	3e-25	68 - 127	100	60 / 60	minus
Harvest21	ABC02683	1384	1e-23	1316 - 1375	98	59 / 60	plus	ABC02683
Harvest35	U35_15064	496	3e-25	370 - 429	100	60 / 60	plus
Harvest35	U35_15062	690	1e-23	622 - 681	98	59 / 60	plus

Contig Sequence (496 bp)

>U35_15064 496 Hv_44K_v2
GCACGAGGCAAACCAGTGGAACAGAGGATGGGGTGATGACGGATACTTCAAGATCATAAG
GGGCAAGAATGAATGTGGCATCGAAGAAGATGTTACTGCCGGCATGCCCTCGACAAAGAA
CATGTACAGAAACAACGATGTCGCCTTTGGAACCGCCATACTTTGAGCAGCGCCTTGGTC
ACAAACGCAGTTGAAATTAGCTGTTTGAATGTAAAATGAAGCCCATAAATTAGCTGTTTG
AATGTAAAATGAAGCCCATAAATTATCTGTTTGAATGTAAAATGAAGCCCATAAATTATC
TGTTTGAATGTAAAATGAAGCCCATAAAATAGATTTGATGGCTCCAGGATTCTGTACTCT
GTACACTAGCGCAAGCGCTGATATGTTGTTGAAACAACACTTGTTCAGAAACAAAAGAGA
ATGATGATAGTATCAATAAAAACATACACGGCTGTCATCTTTCAACCAAANNAAANAAAN
AAAAANAAAAAAAAAA

Homology of Contig U35_15064 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None