barSeed - Barley Seed Development Database

Probe CUST_20542_PI390587928

Source Contig U35_15066

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20542_PI390587928	Hv_44K_v2	TAAAATGAAGCCCGTAAAATAGATTTGATGGCTCCAGGATTCTGTACTCCGTACACTAGC	1361	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.398	3.171	1.398	0.604	0.191	0.236
Raw	187.529	211.233	80.303	55.092	5.193	7.997

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362724	1471	2e-24	1315 - 1374	100	60 / 60	plus	ABC02680 ABC02681 ABC02683
MLOC	MLOC_63917.1	4539	7e-23	1189 - 1248	98	59 / 60	plus	ABC02683
MLOC	MLOC_63916.5	1346	7e-23	1191 - 1250	98	59 / 60	plus	ABC02683
MLOC	MLOC_63916.1	4036	7e-23	1393 - 1452	98	59 / 60	plus	ABC02680 ABC02681 ABC02683
JLOC1	JLOC1_41917.1	1623	4e-23	1393 - 1452	98	59 / 60	plus
Harvest21	ABC02683	1384	1e-23	1257 - 1316	98	59 / 60	plus	ABC02683
Harvest21	ABC02682	701	6e-22	127 - 186	97	58 / 60	minus
Harvest35	U35_15066	1433	3e-25	1362 - 1421	100	60 / 60	plus
Harvest35	U35_15062	690	1e-23	563 - 622	98	59 / 60	plus
Harvest35	U35_15064	496	6e-22	311 - 370	97	58 / 60	plus

Contig Sequence (1433 bp)

>U35_15066 1433 Hv_44K_v2
TCGATCACTGTTGGCCTACTGAAAGCAACCACTCCTGGTAGCTGCAGCAGCTACTACTCC
CGCCTGCTTCCTTGCTTGCTTGCTTTGCTTCCCCGTCGAGGAGGAGGAAGAAGAGGATGG
GGGGCGTGGGCGTCTCCCTCGCGCTGCTCGCCGCCGCCGCCGCCGTCGTCATCTCCGCCG
TCGCTGCCGCCCCGCAGCTGGTCGGAGCAGCCAAGGCAGAGCATTCCCTAGGAATCATCC
AGGAAGACATCATTCAGACGGTCAACGACCATCCCAATGCCGGGTGGACGGCTGGACACA
ACCCCTACTTTGCAAACTACACTATTGAGCAATTCAAGCATATCCTGGGAGTGAAGCCAA
CGCCTCCGGGCTTGCTCGCTGGCGTCCCAATCAAAACCCATCCAAAATCAGCAGATCTCC
CGAAGGAGTTTGACGCTAGAACTCAATGGTCTAGTTGCAGCACAATCGGGAACATACTTG
ATCAAGGTCACTGTGGTGCCTGTTGGGCCTTTGCTGCCGTGGAATCTCTCCAGGATCGTT
TCTGCATTCATCTCAACATGAGCGTCTCACTTTCGGTCAATGACCTACTGGCTTGCTGTG
GTTTTCTGTGTGGTAGCGGTTGTAATGGAGGATATCCTATCAGCGCATGGCGCTACTTCC
GTCGCAGTGGTGTCGTCACTGAGGAGTGTGATCCATACTTCGATCAGACTGGTTGCCAGC
ATCCTGGATGCGAGCCAGCTTATCCTACACCAAAATGTCACAGGAAATGCAAGGTGGAGA
ACCAAGTGTGGAAGAAAAATAAGCATTTCAGTGTTAACGCGTACAGAGTACATTCTAATC
CCCATGACATCATGGCAGAGGTCTACAAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTT
ATGAGGACTTTGCACACTACAAGTCAGGAGTATACAAGCACATCACCGGTGGCGTGATGG
GAGGTCACGCTGTCAAGTTGATTGGTTGGGGAACCAGTGATGCCGGCGAGGATTACTGGC
TTCTTGCAAACCAGTGGAACAGAGGATGGGGTGATGACGGATACTTCAAGATCATAAGGG
GCAAGAATGAATGTGGCATCGAAGAAGATGTTACTGCCGGCATGCCCTCGACAAAGAACA
TGGACAGAAACAACGATGTCGCCTTTGGAACCGCCATACTTTGAGCAGCGCCTTGGTCAC
AAACGCAGTTGAAATTAGCTGTTTGAATGTAAAATGAAGCCCATAAATTAGCTGTTTGAA
TGTAAAATGAAGCCCATAAATTATCTGTTTGAATGTAAAATGAAGCCCATAAATTATCTG
TTTGAATGTAAAATGAAGCCAATAAAAAATCTGTTTGAATGTAAAATGAAGCCCGTAAAA
TAGATTTGATGGCTCCAGGATTCTGTACTCCGTACACTAGCGCAAGCGCTGAT

Homology of Contig U35_15066 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g24550.5	359	0.0	protein\|Papain family cysteine protease domain containing protein, expressed
Brachypodium v1_2	Bradi1g09737.1	352	0.0
Arabidopsis v10	AT1G02305.1	362	2e-177	Cysteine proteinases superfamily protein \| chr1:455816-457974 FORWARD LENGTH=362