barSeed - Barley Seed Development Database

Probe CUST_20358_PI390587928

Source Contig U35_19192

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20358_PI390587928	Hv_44K_v2	GAGCCATCAATTTTTCACCGTTTAGTTGCATCTTGTTTTGGATTCGGTATGGATCCTCCT	97	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_28907.1	3219	2e-24	2161 - 2220	100	60 / 60	plus	ABC13665 ABC13666
JLOC1	JLOC1_19321.1	3984	8e-25	2161 - 2220	100	60 / 60	plus
Harvest21	ABC13665	756	3e-25	98 - 157	100	60 / 60	plus	ABC13665
Harvest35	U35_19192	776	3e-25	98 - 157	100	60 / 60	plus

Contig Sequence (776 bp)

>U35_19192 776 Hv_44K_v2
GTCGTTCTGATGAGTGATAACCAGGGCAGTTCTATTACATCGCGATGTGTGGATAGCAAG
AGAGTGAGTGCTGGGTTTGAAGATGAAAGATAAAACTGAGCCATCAATTTTTCACCGTTT
AGTTGCATCTTGTTTTGGATTCGGTATGGATCCTCCTCACCTCTCTCTCTCTCTCTCTCT
CAAACCCTACGCTCTCATTGCCAACCCGCTGACCCATCGTCCGGGTGGCTGCCACATCAG
TTCCCTGTTACTACGGTGCTGCCAGCCTGCCATTCCATTGCCTTGGATTCGGTTGTGGCG
TGGGCTGGGAACCGTAGAGTTCTGTTCTGATGTGTCGTCTGAGACGGAGGTTTGGTCGGC
TGACTCCAGGTATGAGCAGCTCCCGAGACTGTCTAAGTTACTCACCACTATGGCCAGTCT
GATGGATGGATGGATGCTACTGTGTGATGAAGAGATGGAGTTCTTACAGGGGCGATGATG
ATGACCATGGCTGAAATAAGCATGTCTTGAGCAATTAAGACTGCTGTGGCCTGTGGGTAC
TAAATTAGAGCGCACCCTTACCTCTCTTGCAGCAATTCAATTCATAGTTAATGTTGGATG
TTCTGTGCCTTGGACGGTCATTCTGATGAATGATAACCAGGACAGTCCTCTTACATCGCA
ATGGGTAGATTATGCAGCAAGCTATGTGAGTGTTGGGCTTTAAGATGAAAGGCAAAACTG
AGCCCTCATCAAAAAAAAAAAAAAAAAAAAAAAACAAAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_19192 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None