barSeed - Barley Seed Development Database

Probe CUST_20356_PI390587928

Source Contig U35_19193

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20356_PI390587928	Hv_44K_v2	CAACCTCTTTTTTGGATAAAGAAGAGGGGCGATGCCCATAATTATGACTGGCTGAAATAA	377	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_29448.1	1678	2e-24	336 - 395	100	60 / 60	plus	ABC13665 ABC13666
JLOC1	JLOC1_19608.1	1673	8e-25	331 - 390	100	60 / 60	plus
Harvest21	ABC25856	840	3e-25	378 - 437	100	60 / 60	plus
Harvest35	U35_19193	1447	3e-25	378 - 437	100	60 / 60	plus

Contig Sequence (1447 bp)

>U35_19193 1447 Hv_44K_v2
GCGGAGTTACACCACTAGACCCAATCTAAACCAATAGGGGAGCTCTCGTTGCCTGATCGC
TGACCCATCGTCCAATTGACCGCAGCGGCAGTTCCACACCGTCAAGGTGCTGCCAGCCAC
CGCCGTTTTATTGCCTTTGATTCGGCTGTGCGCGTGGGCTGGGAACCGTGCTCTGTTGTC
TGATGCGTCGTTGGAGCGGGAGGTTTGGTCGGTCGAGGCCAGGTATGAGCAGCTCCTGAG
CTGGCTGGATGGATGGATGCAGGTCATGTGTCGTGAACCAACACCAGGACACCTCTTTTG
GAACGGAGGGAGTATATTTTGGAACGGAGGGAGTATGTATGTACGTATGGATATCATGGT
CATGTTGCTTGGGGGTTCAACCTCTTTTTTGGATAAAGAAGAGGGGCGATGCCCATAATT
ATGACTGGCTGAAATAATCATGTCTTTGAGACATCAAGACAGCCGTGGCAAGGTGGGACT
AAATAGTGTCTGAAAGTGGGTATCTGCGTTGGAGTTGCTCTTAGAGCCCACCCTTACCTC
TGTTGCAGCCTGTCCAATTCATCGCCAATGTTGGATGTTCTGTGCCTTGGACGGTTGTTC
TGATGAGGGCATGTACATTGGTTCAGTCGGAAACCATCGGCAGCATGCAGCCATCTCAGT
GATAACCAGGGCTGTTCTCTTACATTGTGATGTGTGGATTATGCAGCAAGAAATGTGGGT
GTTGGGTTTGAAGATTAAATGCTAAACTGAGACCTCTCTTGCTATGCTACATATACTCAG
TTCAGTTGCATTTTGTTCTGGATTTGGCATGGATCCTCTTCACCTCCCCCCCCCTCTCTC
TCTCTCACACACACACACACACACACTCACACTCACCCTAAAACAAATCAGTCAAGCTCT
CATTGCGACTCGCTGACCCGTCGTCTGTCTGGGGGGCTGCAACATCAGTTCCTCGAATCT
ACGGTGCTGCCAGCCACCGCCATTCCATTGTGCCTTGGATTTGGTTGTGGCGTGGGCTGG
GAACCGTACAGTGTTGTCTGATGTGTCATACGAGCCGGAGGTTTGGTCAGCTGACGCCGG
GCATGAGCAGCTCCTGAGATTGTCTAAGTTACTCACCACTATGACCAGTCTGATGGATGG
ATGGATGGATGCTACTGTGTGATGAAGAGATGGAGTTCTTACCAGGGGCGATGATGATGA
CCCTGGCTGAAATAAGCATGTCTTGAGCAATTAAGACAGCTGTGGCCTGTGGCTACTAAA
TTAGAGCGCACCCTTACCTCTCTTGCAGCAATTCAATTCATAGCTAATGTTGGATGTTCT
GTGCCTTGGACGGTCATTCTGATGAATGATAACCAGGACAGTCCTCTTACATCGCGATGG
GTAGATTATGCAGCAAGCTATGTGAGTGTTGGGCTTTAAGATGAAAGGCAAAACTGAGCC
CTCAATT

Homology of Contig U35_19193 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None