barSeed - Barley Seed Development Database

Probe CUST_20270_PI390587928

Source Contig U35_23728

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20270_PI390587928	Hv_44K_v2	CACCGACATGATCATCCGCAAGTACAAGATGCGCAGCGACGTCCGCAACGTGCACCTCTC	675	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358061	2918	2e-24	685 - 744	100	60 / 60	plus	ABC05664 ABC18311 ABC20877 ABC22130 ABC41146 ABC41736
MLOC	MLOC_64056.1	2152	2e-24	680 - 739	100	60 / 60	plus	ABC05664 ABC18311 ABC20877 ABC22130 ABC41146 ABC41736
JLOC1	JLOC1_42016.1	2134	8e-25	675 - 734	100	60 / 60	plus
Harvest21	ABC23698	986	3e-25	676 - 735	100	60 / 60	plus
Harvest35	U35_23728	988	3e-25	676 - 735	100	60 / 60	plus

Contig Sequence (988 bp)

>U35_23728 988 Hv_44K_v2
CAGCAACTCCACACCAGTCGATCGGTACACGCGCGCGGCAGACACGTTCACTCGTGCGTG
CGTGCAAGCCGCAGCGGCGGACGGCATGAGCTTCTCGTCGCCCCAGCTCCGGCGCCTCAA
GCCGGCGTACCAGTACGTGGTGAACAACTTCCTCGCCGTGCTCGCCGTGCCGCTGGCCGT
CGCGGGCGTCGTCAGCGCGGCGCGCGTCGGGCCGGAGGAGCTGCTGGCGAGGATGCACGC
GCTCCGTCCCGTGCACGTCTTCCTGGCCGCGTTCCTCCCGGCCGCCGCGGCCACCCTGTA
CCTGATGATGCGGCCGCGCTCCGTGTACCTCGTCGACTACGCCTGCTTCCGCACCAAGCC
CAGCCACCGCGTCCCCTTCGGCACCTTCCTCGAGCACGCCAAGCTGGTGACGTTCATCGA
GGGGGCCTCCATTGACGAGCGCAGCGTCCGGTTCATGACGCGGCTGCTGGAGCGGTCCGG
TCTCGGGGAGGAGACGTGCCTGCCCCCCGCGCACCACTTCATCCCGCCGTACCGGAACCT
GGAGGCCTCGCGCCAGGAGGTGGAGCTCGTCATCTTCTCCGCCATCGACGACCTGCTCGC
CAAGACGGGCATCCGCCCCGACGCCATCGACTTCCTCGTCGTCAACTGCAGCCTCTTCGC
GCCCATCCCGTCCTTCACCGACATGATCATCCGCAAGTACAAGATGCGCAGCGACGTCCG
CAACGTGCACCTCTCCGGGATGGGGTGCAGCGCGGGGCTCATCTCTGTGGGGCTCGCGCG
CAACTTCCTGCAGGTGGCGCCACGGGGCTCGCACGCGCTGGTGGTGTCCACGGAGACCAT
CACGCCCAACTACTACGTCGGCAAGGAGCGCGCCATGCTGCTGCCCAACTGCCTCTTCCG
CATGGGCGGCGCGGCGGCGCTGCTGTCCACGTCCCGCGTGGTGCGCACGCTGACGGGCGC
GCAGGACAACGCGTACCGGTGCGTGTAC

Homology of Contig U35_23728 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g14810.1	493	2e-152	protein\|3-ketoacyl-CoA synthase, putative, expressed
Brachypodium v1_2	Bradi1g44030.1	492	5e-160
Arabidopsis v10	AT1G25450.1	492	5e-87	\| Symbols: KCS5, CER60 \| 3-ketoacyl-CoA synthase 5 \| chr1:8938679-8940282 REVERSE LENGTH=492