barSeed - Barley Seed Development Database

Probe CUST_201_PI390587928

Source Contig U35_45846

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_201_PI390587928	Hv_44K_v2	GTTGGTTTGGACAAATTTATTTGCTCCCTAGCCTATTTGAAATATTGATTGTGAACGTGA	28	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376213	767	2e-24	694 - 753	100	60 / 60	plus	ABC01983 ABC10695 ABC12724 ABC22344 ABC45186
MLOC	AK367337	1893	2e-24	1824 - 1883	100	60 / 60	plus	ABC01983 ABC08690 ABC10695 ABC12724 ABC21919 ABC22344 ABC45186
JLOC1	JLOC1_48221.1	964	4e-23	849 - 908	98	59 / 60	plus
Harvest21	ABC45186	530	3e-25	29 - 88	100	60 / 60	minus	ABC45186
Harvest35	U35_45846	530	3e-25	29 - 88	100	60 / 60	minus

Contig Sequence (530 bp)

>U35_45846 530 Hv_44K_v2
TTTTTTTTTTTTTTTTTAGGGATTCAAATCACGTTCACAATCAATATTTCAAATAGGCTA
GGGAGCAAATAAATTTGTCCAAACCAACATTAATTTTGTCTATTACAATCTTTACACTAC
ACCACAACCCAAATTTGCCTACTACTGCCTACTATTACAATACATATGCTACTCTTTGTT
GATACACTTAACAGCTTCACACTTGGCTTCGTAATTCACCTGTGCAAAAAATAAAAATAA
CATGTCCAGGACATCAAACATTAAACAATGATGGATCCAAGTAAACGGGTTCCTGGTCGG
TCACATATCAAATTTGACATACCGTTTTCTATCCATGTAACCATTAAAAGTCTACTTGTA
CTCCCTCAGCTAAAAATATTGCATTTGCAATCACAAACCCAATTTAAGATTAATGAAAAC
TGCAATCAGGTGGAAAACAAAATGAACGAAAACTACAATCAGGTAGAAAACAGAATTAAT
GATCCAACTAATTTTGGTTTAAAATATGTAAAAAAAATATTCATCAAATT

Homology of Contig U35_45846 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None