barSeed - Barley Seed Development Database

Probe CUST_19742_PI390587928

Source Contig U35_14799

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19742_PI390587928	Hv_44K_v2	GTAGGCGATCACATGTACTGTGATCATGTGTGCTTTAGGTGTGTTAGCTTGTAGTAGGTT	1831	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6278.1	810	2e-24	668 - 727	100	60 / 60	plus	ABC01830 ABC01832 ABC01834 ABC01838 ABC01839
JLOC1	JLOC1_4089.1	473	8e-25	335 - 394	100	60 / 60	plus
Harvest21	ABC01839	1922	3e-25	1832 - 1891	100	60 / 60	plus	ABC01839
Harvest35	U35_14799	1922	3e-25	1832 - 1891	100	60 / 60	plus

Contig Sequence (1922 bp)

>U35_14799 1922 Hv_44K_v2
AAGCTTTACTTAAACATTTAAAATATTCTTGAAGTTTCAATCGATCCGTAAACAATTCAA
ATACCAAAAGGTGCAACTTCCATGTTTTTGAGACTTCACAGGACTTTGATCGATTGAGAA
TTTGAGATAATCTGCATTCACAAATTGCAACTTGCACTAATTAGAGAAATCACTAAACTT
AAATCAGTTTTTACTAGACTTAAATGACCTCAGTACAGCGAGACACTGTAAAATTAAGCT
AATAGTTAGGGTTTTTTTATGGAGCCAACCCATTAAGATTTAAGCTAATAGTTAGGTTTC
TCGTGGAACCAATTCATTAAGATTTAAGTCTTAGATTTGATAGTGATGCTCGTATTTTTG
AATTTATTTTAGCCTTTTCAGCAGTGTTCCCTTTAGTGAGGAGGTATGGTTCTGCTGACT
AGATAAAACTGTCAATCCCAAAATGTTGTAGTTCTAGTATTCTTAGTAGGATATATGTGC
ATCCCTTCACTAAAAGTAAAAGTATGTATGTATGTATGTGATCATTTTGCGGTAGGACGG
ACATATGTTGTTATACCCTAGATCCGGACGGTAAAAAAAATAGATCCTGAAATTTCCGTA
CACTACTATTAGATCTAGATAAACTTTATCAAAAGGGTCGAAATATGAAATTTGTCCCCT
GGACGCAGCGGGGCGCGCCGCTTTATGGTGCGACCGGACGACAGCGCGGGACAACGCAGC
AGGCGTCCAAGCATTTTTGCCCATACAGGACGTTTCCACAGATAGCGATGGGCTTATACG
GCCTCGCTCACGTACATATGTCCATGCCCACGCACGCTCGGCTGGCGCCGCGGTACAGCA
TGTAGAGTCCATTGCTCGTAGTCTCTGACCGGCCGCCGAACACCCGAGCATGGCGAGCGC
GAGAACCATGATCCTAGCTACGTGTCACCAGGACGACAGCACAGGACGACTCACGAGTCG
CTAGCATTGGCAGCTCATCCAAAACCCTACATGTCGGTGCCCATGCAAGCTACCACATGT
CATCCCACCAGAGGCTTGCATGCACGACGCGTCTTGATACAACAGGAACATGGAGAGGTA
CACGCGCCGGCTCCTAGCCGTCCGAAGCTCCTCCTCGCCGGCTATATAATCTCGACGTCG
CTAGCCCCTCCGCCATCACCATCAGGCAATCACAGAGCACCACGAGCAGTAGCATACAAA
ACCCTACATCCACTTACTGTTTCCGTTTAGCTAGGTCCCAGGCAGCGCGCAATGGCTTCC
GGTCAGCAGGAGAGGTCGGAGCTGGACCGCATGGCCCGCGAGGGGGAGACCGTCGTCCCC
GGCGGCACCGGTGGGAAGACCCTCGAGGCGCAGGAGCACCTTGCCGAAGGGCGCAGCCGT
GGCGGCCAGACTCGCAAGGAGCAGCTGGGGGAGGAGGGGTACCGCGAGATGGGGCACAAG
GGCGGGGAGACTCGCAAGGAGCAGCTGGGGGAGGAGGGGTACCGCGAGATGGGGCACAAG
GGCGGCGAGACTCGCAAGGAGCAGCTGGGGGAGGAGGGCTACCGCGAGATGGGGCACAAG
GGCGGCGAGACTCGCAAGGAGCAGATGGGAGAGGAAGGCTACCGCGAGATGGGGCGCAAG
GGTGGGCTGAGCACCATGAATGAGTCCGGTGGCGAGCGCGCCGCCAGGGAGGGCATCGAC
ATCGACGAGTCCAAGTTCAAGACCAAGTCCTAAATGATGTATGCCAAGATGTCCCGTGCC
AGTAGCTAGCTACCGGTAGTAGCGAGCAAGCTGACTGCTGAATAAATGACGTAGGTCAAG
ATCAGGTCTTGACATAGGCGTGAGCACGCATGTAGGCGATCACATGTACTGTGATCATGT
GTGCTTTAGGTGTGTTAGCTTGTAGTAGGTTATCATGTGTGCTTAAGGTGTCCCAAGCTT
GT

Homology of Contig U35_14799 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	AT3G51810.1	152	8e-70	\| Symbols: ATEM1, GEA1, AT3, EM1 \| Stress induced protein \| chr3:19214818-19215461 FORWARD LENGTH=152