barSeed - Barley Seed Development Database

Probe CUST_19673_PI390587928

Source Contig U35_9707

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19673_PI390587928	Hv_44K_v2	TGTACTTCGTAGAGCACACTTCCTGACCAAATGATGGACAATAACTCTTCCAGGTACCAG	210	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374062	1766	2e-24	406 - 465	100	60 / 60	plus	ABC15789 ABC18549 ABC19664
Harvest35	U35_9707	766	3e-25	211 - 270	100	60 / 60	plus

Contig Sequence (766 bp)

>U35_9707 766 Hv_44K_v2
GTTACATCCGCCGCCTCCTCCTCGTCTCCGCCGCCGCGGCCTTCATCTACATCCAAGTGC
GGCTCTTCTCTACCCAGTCTCATGACGCCGGACGCCTCGCCCTCGCCGGAGCAGATCAAC
CTGATCTCCCCGTCGCCGCTGTTGTCATAATGGCTTGCAATCGACCAGACTATTTGCAGA
GGACAGTTGAATCTATCCTCAACTTCAGTTTGTACTTCGTAGAGCACACTTCCTGACCAA
ATGATGGACAATAACTCTTCCAGGTACCAGAAAGCAGTTGCTTCAAAGTTCCCACTATTT
ATATCGCAGGTAATGCGAATAGGTAATAGTAATTTCAGTTCTTGTTCTCGGTCTCTTTAT
GTGTGTGGAAGGATATTTTTACTTTGCTTCTTCCAATTGCAGGATGGAACAAATGGAGAT
GTAAAAAATAAGGCCCTGAGTTATACCCAAATAAGATATATGCAGCATGTAGATCTCGAA
CCTGTGCACACTGAAAGACCAGGGGAACACATTGCATATTACAAGATAGCTAGTAGACCA
CTATAAATGGGCCTTGGATGAGCTATTCATTAAGCATGATTTTCGCCGAGTTATCATTCT
GGAAGATGACATGGAGATCGCCCCAGATTTCTTCGACTACTTCGAGGCTGCAGCGAAATT
ACTTGATACTGACAAGTCGATAATGGCTGTTTCTTCTTGGAATGACAATGGGCAAAAGCA
GTTCGTTTATGACCCAAAAGCTCTTTACCGTTCGGACTTCTTTCCT

Homology of Contig U35_9707 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi3g60820.1	444	4e-66
Arabidopsis v10	AT4G38240.1	444	8e-56	\| Symbols: CGL1, CGL, GNTI \| alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative \| chr4:17932006-17935209 REVERSE LENGTH=444