barSeed - Barley Seed Development Database

Probe CUST_19608_PI390587928

Source Contig U35_664

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19608_PI390587928	Hv_44K_v2	GGGATAGAGTGACACTGATGGAGTTTTTACTTCTCGTTGTGAAGCTATTTTATTGCCCCT	1614	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.739	1.448	1.152	0.837	0.427	0.478
Raw	25166.867	31660.067	23031.633	25269.453	4667.357	5713.947

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57298.2	1839	3e-21	1759 - 1819	97	59 / 61	plus	ABC02222 ABC02225 ABC02226
JLOC1	JLOC1_37115.1	2042	2e-21	1811 - 1871	97	59 / 61	plus
Harvest21	ABC02219	603	3e-25	49 - 108	100	60 / 60	minus
Harvest21	ABC02225	421	6e-22	317 - 377	97	59 / 61	plus	ABC02225
Harvest35	U35_664	1699	3e-25	1615 - 1674	100	60 / 60	plus

Contig Sequence (1699 bp)

>U35_664 1699 Hv_44K_v2
ACCAAACCCTCGCTCTTCCCACCGCAGGAAAGAGCTCCTCCCATCCCCTCCCCCCACCGC
CTCCACCGACGCATCGATCGAATCCGGGACACGATCTCGGATTCGCTCGGCCAATCGACG
CGCACCAGCCCCCCGGATCGTCGTTCGTACTCCCCCACCGCGAGCGCTTCAGCCATGGCA
GGAATGGCACCAGAGGGTTCCCAGTTTGATGCTAAGCACTATGACAGTAAGATGACTGAG
TTACTGAACCAAGGTGACACTGAGGAGTTTTTCACCTCATATGATGAGGTGCATGAAAGT
TTTGATGACATGGGCCTCCAAGAGAACCTTCTTAGAGGCATCTATGCTTATGGTTTTGAG
AAGCCATCAGCCATTCAGCAAAGAGGAATTGTTCCCTTCTGCAAGGGTCTTGATGTGATT
CAACAAGCTCAGTCTGGTACAGGAAAAACTGCCACCTTCTGTTCTGGAATCTTGCAGCAG
CTTGACTATGGATTGGTTGAGTGCCAGGCATTGGTCCTTGCTCCGACCCGTGAGCTTGCA
CAGCAGATTGAGAAGGTCATGCGTGCTCTTGGTGACTACTTAGGCGTCAAGGTGCATGCA
TGTGTTGGTGGAACTTCTGTCCGTGAGGATCAGAGGATTCTTGCCAGTGGTGTGCATGTT
GTTGTCGGCACACCTGGTCGTGTGTTCGATATGTTGCGCAGGCAATCCCTCCGCCCAGAT
AACATCAAGATGTTTGTGTTGGATGAAGCTGATGAGATGCTATCACGTGGTTTCAAGGAT
CAGATCTATGATATCTTCCAGCTTCTTCCATCAAAGATTCAGGTTGGGGTGTTCTCTGCT
ACCATGCCTCCTGAGGCTCTTGAGATAACCCGCAAGTTCATGAACAAGCCCGTGAGGATT
CTTGTCAAGAGAGATGAGCTTACCCTTGAGGGTATCAAGCAATTCTATGTCAATGTTGAG
AAGGAAGAGTGGAAGCTGGACACACTCTGTGACCTGTACGAGACCTTGGCAATTACCCAG
AGTGTCATCTTTGTGAACACCCGCCGCAAGGTGGACTGGCTCACCGACAAGATGAGGGGA
AGGGACCACACTGTCTCTGCAACACACGGAGACATGGACCAGAACACTAGGGACATCATC
ATGAGGGAGTTCAGATCTGGCTCTTCTCGTGTGCTCATCACCACCGACCTGCTGGCCCGT
GGTATTGATGTGCAGCAAGTCTCCCTTGTCATCAACTATGACCTGCCGACCCAGCCTGAG
AACTACCTCCATCGCATTGGTCGTAGTGGTCGGTTCGGGAGGAAGGGAGTTGCCATCAAC
TTCGTCACCCGTGAAGATGAGAGGATGCTGTTCGACATCCAGAAGTTCTACAACGTGGTC
ATTGAGGAGCTCCCGGCCAATGTCGCCGACCTTCTCTAGATTATTATCATAGGAATGCAG
TAAGGTGCTCGATAAAGTTCGTTTTTGTTGAATATCTCCCAACTCTCAGTTTTGGAGTGG
TAAGGTCTGGTTCTGTTTGAATCGCGGTTAAGGATCGAGTTTTTTTCTTTTTCTTGTTAT
GCAATGTCCGGAAATTTTTGTAGTGCGTAGGCTGTGCCAACTCCCGGGCTAGCTGGGATA
GAGTGACACTGATGGAGTTTTTACTTCTCGTTGTGAAGCTATTTTATTGCCCCTCTCTTT
TTAAAAAAAAAAAAAAAAA

Homology of Contig U35_664 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g48750.2	415	protein\|DEAD-box ATP-dependent RNA helicase, putative, expressed
Brachypodium v1_2	Bradi3g03710.1	415
Arabidopsis v10	AT1G54270.1	412	\| Symbols: EIF4A-2 \| eif4a-2 \| chr1:20260495-20262018 FORWARD LENGTH=412