barSeed - Barley Seed Development Database

Probe CUST_19607_PI390587928

Source Contig U35_665

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19607_PI390587928	Hv_44K_v2	TGTTGCTGGAGTCCTCACTTTATTTGTTAAGACTATGTAATGACCGAATGATGTTATTTG	1638	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69436.2	1815	2e-24	1629 - 1688	100	60 / 60	plus	ABC02222 ABC02226 ABC48039
MLOC	MLOC_69436.1	1607	2e-24	1460 - 1519	100	60 / 60	plus	ABC02222 ABC02226 ABC48039
MLOC	MLOC_69436.4	2507	2e-24	2206 - 2265	100	60 / 60	plus	ABC02222 ABC02226 ABC48039
JLOC1	JLOC1_46004.1	1633	8e-25	1363 - 1422	100	60 / 60	plus
Harvest21	ABC48063	465	3e-25	374 - 433	100	60 / 60	plus
Harvest21	ABC48039	452	3e-25	363 - 422	100	60 / 60	plus	ABC48039
Harvest21	ABC02226	1098	3e-25	69 - 128	100	60 / 60	minus	ABC02226
Harvest21	ABC02224	1779	3e-25	1616 - 1675	100	60 / 60	plus
Harvest21	ABC02221	676	3e-25	44 - 103	100	60 / 60	minus
Harvest35	U35_36529	582	3e-25	106 - 165	100	60 / 60	minus
Harvest35	U35_666	710	3e-25	583 - 642	100	60 / 60	plus
Harvest35	U35_665	1845	3e-25	1639 - 1698	100	60 / 60	plus
Harvest35	U35_662	466	3e-25	375 - 434	100	60 / 60	plus
Harvest35	U35_661	449	3e-25	365 - 424	100	60 / 60	plus

Contig Sequence (1845 bp)

>U35_665 1845 Hv_44K_v2
TACTGGCCTCTGTTTTTCTCTCTCCTGCCAATCCCCTCATCGCCTCCGCTCCCACGCCGC
CGAATCCGAGACCTGATCTCGGATTCACCGCAGCGCGACCCCTCCGGCGATCCGCGGCAC
CTCCTCCCCGACGCTTCAGCCATGGCAGGAATGGCACCGGAAGGTTCCCAGTTTGATGCA
AAGAACTATGATTCTAAGATGCAGGAGCTGCTGAGCCAAGGTGAGACCGAGGAGTTCTTC
ACCTCATATGATGAAGTTCATGAGAGCTTTGATGACATGGGTCTCCAAGAGAACCTCCTC
AGGGGAATTTATGCTTATGGTTTTGAGAAGCCTTCTGCCATCCAGCAAAGGGGGATTGTT
CCTTTCTGCAAGGGGCTTGATGTTATCCAGCAGGCACAATCTGGAACAGGAAAGACTGCT
ACTTTCTGTTCTGGAATCCTCCAGCAGCTTGACTATGGTTTGGTTGAGTGCCAGGCCTTG
GTCCTTGCTCCCACCCGTGAGCTTGCGCAGCAAATTGAGAAGGTCATGCGTGCCCTTGGT
GACTACTTGGGTGTGAAGGTTCATGCATGTGTTGGAGGGACGTCAGTTCGTGAGGACCAG
AGGATTCTTGCAAGTGGAGTGCATGTCGTTGTTGGTACTCCTGGTCGTGTGTTTGACATG
CTCCGTAGGCAGTCTCTGCGCCCTGACAACATCAAGATGTTTGTCCTTGATGAAGCTGAT
GAGATGCTTTCCCGTGGATTCAAGGATCAGATTTATGACATCTTCCAGCTGCTCCCAGGG
AAGATTCAAGTTGGTGTCTTCTCTGCTACCATGCCCCCGGAAGCCCTTGAGATTACCCGC
AAGTTCATGAACAAGCCTGTGAGGATCCTTGTCAAGAGGGATGAGCTCACCCTTGAGGGT
ATCAAGCAGTTCTATGTCAATGTGGAGAAGGAAGAGTGGAAGCTTGACACACTGTGTGAC
CTGTACGAGACTCTTGCCATCACCCAGAGTGTCATCTTCGTGAACACCCGCCGCAAGGTG
GACTGGCTCACCGACAAGATGAGGGGCAGGGACCACACCGTCTCCGCTACTCATGGAGAC
ATGGACCAGAACACTAGGGACATCATCATGAGGGAGTTCAGATCAGGTTCTTCACGTGTG
CTCATCACCACTGACCTGCTTGCTCGTGGTATTGATGTCCAGCAAGTGTCCCTGGTCATC
AACTATGACCTCCCGACCCAGCCAGAGAACTACCTGCATCGCATTGGTCGTAGTGGTCGG
TTTGGAAGGAAGGGTGTGGCCATCAACTTTGTTACGCGTGAAGATGAGAGGATGCTGTTT
GACATCCAGAAGTTCTACAACGTGGTGATTGAAGAGCTCCCAGCCAACGTTGCCGACCTT
CTGTGATCGTGCGGGCTGTGGAGAACATATGGTAAGGGGGGTGGGGGTCCTGACAGGGCT
TTGTTTTTGTTGAAATATCACCAAGTTTCTTGTCTGTGGGGGAAGGCGGGTTTAAGGGAT
AAATGGTCTGCTGGGGTTCTACTTTAAAGTCGTTGTCGTGGACAATTTGGGATTTATTAA
GCCATGTTTTGGGAATTTTTGTAGTTGCTAGGCTGTGGTTCTATGTGCTGGGGAGGGAGG
CGTCGCTGCTCATGTTGCTGTTGCTGGAGTCCTCACTTTATTTGTTAAGACTATGTAATG
ACCGAATGATGTTATTTGTTTGTGTCATCCTTGACTCTTTACCTAAAAAAAAAAATCCTG
CAATCGCTGCTAGTAATGCTATCGTTATTCTGATATTTAAAAAAAAAAAAAAAAAAAAAA
AAAAAGCAATAGCATTTGCCTGTCTAGTCAAAAAAAAAAAAAAAA

Homology of Contig U35_665 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g48750.2	415	protein\|DEAD-box ATP-dependent RNA helicase, putative, expressed
Brachypodium v1_2	Bradi1g34170.4	415
Arabidopsis v10	AT1G54270.1	412	\| Symbols: EIF4A-2 \| eif4a-2 \| chr1:20260495-20262018 FORWARD LENGTH=412