barSeed - Barley Seed Development Database

Probe CUST_19606_PI390587928

Source Contig U35_666

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19606_PI390587928	Hv_44K_v2	GTCATCCTTGACTCTTTACCTATCGCATGTAATCCTGCAATCGCTGCTAGTAATGCTATC	647	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69436.2	1815	2e-24	1694 - 1753	100	60 / 60	plus	ABC02222 ABC02226 ABC48039
MLOC	MLOC_69436.1	1607	2e-24	1525 - 1584	100	60 / 60	plus	ABC02222 ABC02226 ABC48039
MLOC	MLOC_69436.4	2507	2e-24	2271 - 2330	100	60 / 60	plus	ABC02222 ABC02226 ABC48039
JLOC1	JLOC1_46004.1	1633	8e-25	1428 - 1487	100	60 / 60	plus
Harvest21	ABC02226	1098	3e-25	4 - 63	100	60 / 60	minus	ABC02226
Harvest21	ABC02224	1779	3e-25	1681 - 1740	100	60 / 60	plus
Harvest35	U35_36529	582	3e-25	41 - 100	100	60 / 60	minus
Harvest35	U35_666	710	3e-25	648 - 707	100	60 / 60	plus

Contig Sequence (710 bp)

>U35_666 710 Hv_44K_v2
ACGAGACTCTTGCCATCACCCAGAGTGTCATCTTCGTGAACACCCGCCGCAAGGTGGACT
GGCTCACCGACAAGATGAGGGGCAGGGACCACACCGTCTCCGCTACTCATGGAGACATGG
ACCAGAACACTAGGGACATCATCATGAGGGAGTTCAGATCAGGTTCTTCACGTGTGCTCA
TCACCACTGACCTGCTTGCTCGTGGTATTGATGTCCAGCAAGTGTCCCTGGTCATCAACT
ATGACCTCCCGACCCAGCCAGAGAACTACCTGCATCGCATTGGTCGTAGTGGTCGGTTTG
GAAGGAAGGGTGTGGCCATCAACTTTGTTACGCTGCGGGCTGTGGAGAACATATGGTAAG
GGGGGTGGGGGTCCTGACAGGGCTTTGTTTTTGTTGAAATATCACCAAGTTTCTTGTCTG
TGGGGGAAGGCGGGTTTAAGGGATAAATGGTCTGCTGGGGTTCTACTTTAAAGTCGTTGT
CGTGGACAATTTGGGATTTATTAAGCCATGTTTTGGGAATTTTTGTAGTTGCTAGGCTGT
GGTTCTATGTGCTGGGGAGGGAGGCGTCGCTGCTCATGTTGCTGTTGCTGGAGTCCTCAC
TTTATTTGTTAAGACTATGTAATGACCGAATGATGTTATTTGTTTGTGTCATCCTTGACT
CTTTACCTATCGCATGTAATCCTGCAATCGCTGCTAGTAATGCTATCGTT

Homology of Contig U35_666 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g48750.3	370	6e-69	protein\|DEAD-box ATP-dependent RNA helicase, putative, expressed
Brachypodium v1_2	Bradi1g34170.2	404	6e-69
Arabidopsis v10	AT1G54270.1	412	5e-68	\| Symbols: EIF4A-2 \| eif4a-2 \| chr1:20260495-20262018 FORWARD LENGTH=412