barSeed - Barley Seed Development Database

Probe CUST_19357_PI390587928

Source Contig U35_7605

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19357_PI390587928	Hv_44K_v2	TCTACCGCCATCAGATCATTAATGTCTACAATCAACGATACGAGAGTGGTGCGCAGTTCT	660	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250130.1	3143	2e-24	2180 - 2239	100	60 / 60	plus	ABC09725 ABC18053 ABC18094
MLOC	MLOC_52397.1	2421	2e-24	918 - 977	100	60 / 60	minus	ABC09725 ABC18094
MLOC	MLOC_52397.2	2613	2e-24	890 - 949	100	60 / 60	minus	ABC09725 ABC18053 ABC18094
JLOC1	JLOC1_33578.1	2912	8e-25	1663 - 1722	100	60 / 60	plus
Harvest21	ABC15612	772	3e-25	661 - 720	100	60 / 60	plus
Harvest35	U35_7605	772	3e-25	661 - 720	100	60 / 60	plus

Contig Sequence (772 bp)

>U35_7605 772 Hv_44K_v2
CCTCGTGCTCGAATTCGCACGAGGCAATAGCATTCGTACAGACTCTTGCAAATCTTGAAG
GCATAGAGAAGGCACTACCATTTCTAAAACCTTTAATTGAAGCAGATACCATTAAATCAT
TCATCCAAGGGTTTCTTCCTGGACTTGCTCTGAAGATCTTCCTCATAGTGCTTCCAACTA
TACTGATGTTCATGTCACAGTTTGAAGGATTGATATCACAGTCATCACTAGAGCGAAGAA
CTGCGTCCAAGTATTTTATATTCTTGTTCTTCAATGTATTTTTGGGGAGCATTGTTACAG
GATCTGCTTTGGAGCAGCTTAATACCTACCTCCATGCGTCAGCTAATGACATACCAAGGA
TCATTGGTGTAGCCATACCAATGAAGGCAACATTTTTCATAACATACGTAATGGTCGATG
GTTGGACTGGTGTAGCTCTTGAAATACTGAGAATAAGGGCATTTGTACTATACCACTTGA
AAAACTTTTTCTTGGTCAAGACGGAGAAGGACAGAGAAGAGGCAATGGATCCGGGCAGTA
TCTGTTTTTACTGGTCTGAGCCTCGAATACAGCTATATTTCTTGCTTGGTCTTGTGTATG
CTGCAGTGACACCGCTCTTGCTACCTTTTATACTGGTGTTCTTTGCGTTGGGATACGTTG
TCTACCGCCATCAGATCATTAATGTCTACAATCAACGATACGAGAGTGGTGCGCAGTTCT
GGCCCAACGTGCATCTACGCATAATCGTAGCCTTGATTGCATCGCAGCTGCT

Homology of Contig U35_7605 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g51630.2	767	1e-145	protein\|early-responsive to dehydration protein-related, putative, expressed
Brachypodium v1_2	Bradi2g39230.1	769	2e-152
Arabidopsis v10	AT3G21620.1	756	4e-129	ERD (early-responsive to dehydration stress) family protein \| chr3:7611044-7614041 REVERSE LENGTH=756