barSeed - Barley Seed Development Database

Probe CUST_1917_PI390587928

Source Contig U35_5727

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1917_PI390587928	Hv_44K_v2	AACAGTTTCAGAATTTTGCGATCGTCGATCAAAGTTCAACAAGCCAAGCCAGTCAACTGG	716	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250484.1	3791	2e-24	861 - 920	100	60 / 60	plus	ABC06398 ABC19284 ABC38126
MLOC	AK250313.1	3742	2e-24	831 - 890	100	60 / 60	plus	ABC06398 ABC19284 ABC38126
MLOC	MLOC_1151.1	1806	3e-21	1122 - 1181	97	58 / 60	minus	ABC16577 ABC45189
JLOC1	JLOC1_709.1	1867	2e-21	630 - 689	97	58 / 60	plus
Harvest21	ABC11848	902	3e-25	717 - 776	100	60 / 60	plus
Harvest35	U35_5727	903	3e-25	717 - 776	100	60 / 60	plus

Contig Sequence (903 bp)

>U35_5727 903 Hv_44K_v2
GGGGAGCAGCGCCAGCAGCACCAGCGATAGTGGGGGGGAGCTCGGACGAGGCCTAGGGTT
TCCGGAGCCCGCCTCCTCCTGCGCCGCCGTTCGCCGAGCTTGTTCAGCAGCGGCCATCAT
GGTTAGGAAGAAAAGAACTGGTCCTGGCAGCCCTGGTGAGAGTTCTGGGGAAGCTTCGGG
AGCTTCTGGACAGGGTTCCTCGCAGCGAGCTGAGAGAGCTCCTCAACAGCATGGTGGAGG
ACGTGGTTTGGCACCGCAACACGGTAGCCGTGGTGGGGGGCAACATCAGGGCCGTGGTGG
GCACTATCAGGGGTATGGAGGATCAGCTTCACACCATCCAGGTGGTGGCCCACCTGAATA
TCAACAGCGTGACTATCAGGGGCGTGGACATCCCGGTGGCGGTCCACCTGAATATCAACA
TCGTGACTATCAGGGGCGTGGACATCCGGGGGGTGGCCCACCTGAATATCAACCACGTGA
CTATCAGGGACGTGGTGGTGCACGCCCCAGAGGTGGTGGAGTGCCGCAGCCATACTATGG
TGGGCATAGGGGAGGTAGTGCTGGACGTAATGTTCCTCCAGGTCAATCAAGAACAGTTCC
CGAGCTGCACCAAGCCCCCCATGTCCAATATCAAGCCCCGATGGTTTCACCATCTGCATC
GGGAGCTGGCTCATCCTCTCAGTCTGTGGCAGAGGTGAGCAGTGGACAAGTTCAGCAACA
GTTTCAGAATTTTGCGATCGTCGATCAAAGTTCAACAAGCCAAGCCAGTCAACTGGCACC
AGCATCAAGCAAATCAGTTAGATTTCCGTTGCGCCCTGGAAAGGGTACACATGGNGATAG
GTGTGTTGTGAAGGCAAACCATTTCTTTGCTGAGCTCCCTGATAAAGACCTTCACCAATA
CGA

Homology of Contig U35_5727 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g47870.1	1119	1e-76	protein\|PINHEAD, putative, expressed
Brachypodium v1_2	Bradi5g18540.3	1017	3e-96
Arabidopsis v10	None