barSeed - Barley Seed Development Database

Probe CUST_18885_PI390587928

Source Contig U35_30367

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18885_PI390587928	Hv_44K_v2	TGGAAACGTGTGAATTGGAACTTGGCTGATGGGACACATTTATGAAACTAATTTGAGCAG	525	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21344.1	634	2e-24	8 - 67	100	60 / 60	minus	ABC16291 ABC23156 ABC24312 ABC30267
JLOC1	JLOC1_14817.2	555	8e-25	471 - 530	100	60 / 60	plus
JLOC1	JLOC1_14817.1	652	8e-25	568 - 627	100	60 / 60	plus
Harvest21	ABC30267	606	3e-25	526 - 585	100	60 / 60	plus	ABC30267
Harvest35	U35_30367	606	3e-25	526 - 585	100	60 / 60	plus

Contig Sequence (606 bp)

>U35_30367 606 Hv_44K_v2
CTCACCCGTGGTGGACCTTGTTGCCAGATCGCTGGATCTGATGAATCCGCTCCTCTCCGA
CAAGGCCACAGCTGGATCGGGTCCTCCGCAACAAGGCCACCATTGGATCCCCTCCTCTCC
TCCGCTCCGCCCTCTCCAGTAGCTCTCCATCGCCCTCGCGCCCCAGATCCAAACCACCAG
CAGTTCGAGGCGAAACCCTCGTGCTCATCACCTCCATCTCCACCACGGAGGGAAGGCGAA
GCCGCTCAAGCAGGCCAAGGTCGCCGAGAAAGACTACAACGAGGTCAACTTGATCAATCT
TGACACCAACATCAGGAATCATTCGAGCGGAAGTGTCACCAGCCCTTCGCCACTGCGAGA
ATATACATTGTGCACACTCCTTTACAGTAGCTCGAGGCGTACTAAATAGAATGTAAAGAT
TGTAATATTGTAATGGTAGGCATATCTGGGTTGGATTAAACATGTACAGCTTGTAGTAGA
CTTTTTTACCATTCTTGTTCTGTTTAAAATATTGATTATGTGATTTGGAAACGTGTGAAT
TGGAACTTGGCTGATGGGACACATTTATGAAACTAATTTGAGCAGTTTTAAAAAAAAAAA
AAAAAA

Homology of Contig U35_30367 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None