barSeed - Barley Seed Development Database

Probe CUST_18796_PI390587928

Source Contig U35_15047

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18796_PI390587928	Hv_44K_v2	GCCTCTTAAGATGCTAAAGCTCTATGCAATCCCATATGTGATATTTGTTATGTGGCTGGA	972	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.556	1.964	1.596	1.282	0.655	0.842
Raw	27.952	155.666	99.268	135.650	24.006	33.548

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21559.2	1647	2e-24	810 - 869	100	60 / 60	plus	ABC06725 ABC07663
JLOC1	JLOC1_14954.1	2511	8e-25	841 - 900	100	60 / 60	plus
Harvest21	ABC06725	1683	3e-25	962 - 1021	100	60 / 60	plus	ABC06725
Harvest35	U35_15047	1693	3e-25	973 - 1032	100	60 / 60	plus

Contig Sequence (1693 bp)

>U35_15047 1693 Hv_44K_v2
ACCGCAAATCCCACTCCCTTCCACCCGCCCGGACGCACAAGATCCTGGGCGACCGGCGCG
GCCGTGGTGGTACACGACTGGGCTAGCTAGCCATCGCTGCCGTTGCCCAATGGCCCGGCT
CGCCCTCTCCGACTGCCGCGGCCTCACGCCGCTCCGCGCGCGCAGCGCCATTGCGCTGCC
GTCGCCTCCCCACCTCGCCGCGGGGCCGCGTCGCCCCGCGCCTGCCGCCATCCATCGCGA
TTGGGCGCTCCGCGTCTCCGCGCCAACCCGCCTCGCGTCCGTCCTCGAGGAGGATAAAAG
GGGCCTCGGGGGAGCGGAGGAGGCCGGGAGCTCTTCGGCCGGGTTCAACCCGGGGGCGCC
GCCGCCGTTCGGCCTGGCGGAGATCCGCGCGGCCATCCCGAAGCACTGCTGGGTCAAGGA
CCCGTGGCGGTCCATGAGCTACGTGCTGCGCGACGTCCTGGTCGTGCTCGGCCTCGCCGC
CGCCGCCGCGCGGGCCGACAGCTGGCTCGTCTGGCCGCTCTACTGGGCCGCGCAGGGCAC
CATGTTCTGGGCGCTCTTCGTCCTGGGACACGACTGTGGGCATGGGAGCTTCTCGAGCAA
CCCAAAGCTAAACAGCGTGGTCGGCCACATACTCCATTCCTCCATCCTCGTTCCATACAA
CGGCTGGAGGATTAGCCACAGGACGCACCACCAGAACCACGGCCATGTGGAGAAAGACGA
ATCCTGGCACCCGCTACCCCAGAGGCTGTACAATAGCCTGGACAGTATGACAAAGAAGTT
GCGGTTCAGCATGCCATTTCCCATGCTTGCATTCCCCTTATACTTGTTTGCGAGGAGTCC
TGGCAAGGAAGGCTCACACTTCAACCCAAACAGCGATTTATTCCAACCTAATGAGAAAAA
GGATGTGCTAACATCCACTGCATCCTGGCTGGCAATGATTGGGGTTCTCGCAGGTCTGAC
CTTTGTGATGGGGCCTCTTAAGATGCTAAAGCTCTATGCAATCCCATATGTGATATTTGT
TATGTGGCTGGATTTTGTCACATACTTGCATCATCATGGTCACGAAGACAAGGTCCCCTG
GTATCGTGGAAAGGAATGGAGCTATCTGCGTGGAGGATTGACAACACTTGATCGGGACTA
CGGGTTGATCAACAAGATACACCATGACATTGGCACTCATGTCATTCATCATCTTTTCCC
ACAAATCCCGCATTATCATCTTGTCGAGGCGACTGAGGCAGCAAAACCAGTGCTTGGCAA
GTACTACAAAGAACCAGAGAAGTCGGCTCCTCTCCCATTCCACCTACTCCAGGTGCTATC
GCGGAGTTTGAAGAAGGATCACTATGTTAGCGACACCGGAGACATAGTTTACTACCAAAG
TGAGTCAGAAACGAGTACATCTGGACAGAGGTCTGATTAAGATGAAACATTAGCATATAT
AGGTCATCCTTAAACTCCTCAGGAGGTTGTGGCTTAAGTAAAGAGTTAAACACCCTTACT
AGGCTCCTGGGATCTCGGATTGGCGAGTCCATGAATGTACATCATGAAGCACGAATGTAG
TAACTAGTGAATTATTACCATTGTAAAAGAGCAATTGCTGCTCGCTTCTGCTCGCTTCAA
CGCTTGCCTTGATCTGCTGGTATAGCCCCCTTGGAGTACATCTTATATATATATATATTT
TTTTTTTTTTCTC

Homology of Contig U35_15047 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g18070.1	459	protein\|omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi1g65580.2	443
Arabidopsis v10	AT5G05580.1	435	\| Symbols: FAD8 \| fatty acid desaturase 8 \| chr5:1664331-1666345 FORWARD LENGTH=435