barSeed - Barley Seed Development Database

Probe CUST_18591_PI390587928

Source Contig U35_6846

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18591_PI390587928	Hv_44K_v2	TAATCTAACCATCTTCCTAGGATTAGTCTTTTGCTCGTCGGTCGATCTTAGCACGACGAC	78	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356005	2065	2e-24	88 - 147	100	60 / 60	plus	ABC04674 ABC04676 ABC04677 ABC15844 ABC36284
MLOC	MLOC_55027.1	2536	2e-24	2247 - 2306	100	60 / 60	minus	ABC04674 ABC04676 ABC04677 ABC15844 ABC36284
MLOC	MLOC_55027.2	3160	2e-24	1902 - 1961	100	60 / 60	minus	ABC04674 ABC04676 ABC04677 ABC15844 ABC36284
JLOC1	JLOC1_35464.1	2284	8e-25	229 - 288	100	60 / 60	plus
Harvest21	ABC14210	308	3e-25	79 - 138	100	60 / 60	plus
Harvest35	U35_6846	309	3e-25	79 - 138	100	60 / 60	plus

Contig Sequence (309 bp)

>U35_6846 309 Hv_44K_v2
GGAGAGCAGAGATCGATCAAGCGAGCCCGCGCACGCACAAAGCAGCCGTCTCCTCCTCTT
CCTCCTACACACGCCCACTAATCTAACCATCTTCCTAGGATTAGTCTTTTGCTCGTCGGT
CGATCTTAGCACGACGACGATCGCTGACATGGGGTCCGTGCCGGAGGAGACGGTGGTGGC
GGCGGTTTTTTTTTGCGGCTGAGGAGGTGGTGTTCCGGTCGAGGCTGCCGGACATCGAGA
TCCCCAACGAGCAGACGCTGCAGAGCTACTGCTTCGCCAAGATGGCGGAGGTGGGGTCCC
GGCCCTGCA

Homology of Contig U35_6846 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None