- Probe CUST_18171_PI390587928
- Source Contig U35_19274
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_18171_PI390587928 | Hv_44K_v2 | ATTCAAAAATAATATTCAGTCAGGCCCGACTATTCCTATCCCGAGCTCACCAATCCTGGT | 636 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.836 | 1.338 | 1.073 | 0.688 | 0.236 | 0.263 |
| Raw | 93.435 | 95.191 | 74.485 | 73.168 | 9.135 | 11.171 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK361243 | 1917 | 2e-24 | 575 - 634 | 100 | 60 / 60 | plus | ABC09506 ABC37822 ABC49680 ABC50194 |
| MLOC | MLOC_14390.1 | 2815 | 2e-24 | 2006 - 2065 | 100 | 60 / 60 | minus | ABC09506 ABC37822 ABC49680 ABC50194 |
| MLOC | MLOC_14390.2 | 2019 | 2e-24 | 1207 - 1266 | 100 | 60 / 60 | minus | ABC09506 ABC37822 ABC49680 ABC50194 |
| MLOC | MLOC_14390.3 | 3017 | 2e-24 | 2195 - 2254 | 100 | 60 / 60 | minus | ABC09506 ABC37822 ABC49680 ABC50194 |
| MLOC | MLOC_14390.4 | 1977 | 2e-24 | 1157 - 1216 | 100 | 60 / 60 | minus | ABC09506 ABC37822 ABC49680 ABC50194 |
| JLOC1 | JLOC1_9832.4 | 2238 | 8e-25 | 773 - 832 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9832.3 | 2093 | 8e-25 | 731 - 790 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9832.2 | 2072 | 8e-25 | 607 - 666 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9832.1 | 1898 | 8e-25 | 536 - 595 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC10613 | 762 | 3e-25 | 637 - 696 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_19274 | 762 | 3e-25 | 637 - 696 | 100 | 60 / 60 | plus |
Contig Sequence (762 bp)
>U35_19274 762 Hv_44K_v2 GCGGCGGCGAGGGCGAGCGGGCGATAAAATCTCGCGGCCTCTCTCCTCTCGGTTTCGATT CCCGTCTTCGCCTCGCCAACTCCAACTCCAACTCCAACTCTCCCTCTCTCTCTCGTTCGC TTCCTCGGCAACAGGACGAACAACTCTGGGTTGAGCGCACACTCAAATGGGTATCTTCAG TGGAACGCCTCCTCCGAGCTGCCCATCAGCTCCGCATTGCGCGGAATGGGCTAAAGTCTA TCTGAAGTACTGCCTGTGCAGCACAAAGGATGGTGTTGCCTTGGGTCTTGGACTGGCTAG TGTCCTCAGTTGGGGTATCGCCGAGGTGCCGCAGATCATCACAAATTACAAACAGAAGTC AACAGAAGGCCTTTCTATTGCCTTTCTGATGACCTGGATAGTTGGGGATTTGTTTAACCT TGCTGGCTGTTTCCTGGAACCTGCTACTCTGCCAACACAGTTTTACATGGCATTGCTATA TACCATCACAACTGTGATTCTCACTGGACAGACAATATACTATAGCCACATCTACCATCT TAAAGTAAAGAAAACTGGGACAACTGCCAAGTCTCAGAAACATCAACGCGGGGATGCTTC ATTACGTGAGAAGCTTTTGGGACATAGGGACGAGGCATTCAAAAATAATATTCAGTCAGG CCCGACTATTCCTATCCCGAGCTCACCAATCCTGGTGAACACAGAAGTATTCCGGCAACG TCATGGTTCAGTCAGCCCCAACTCAGACTACTACTATGCGTC
Homology of Contig U35_19274 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g16170.4 | 394 | 7e-69 | protein|PQ loop repeat domain containing protein, expressed |
| Brachypodium v1_2 | Bradi2g09940.2 | 397 | 8e-84 | |
| Arabidopsis v10 | None |