barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_18144_PI390587928Hv_44K_v2TTTAACAAATGCCAACTTGGAAGGGGCACTTGTGACAGGGAACACTTCTTTCAAAGGCTC444GeneList: None
MasterList: None



Probe Values

This probe has no recorded values for this experiment





Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK36381759862e-243397 - 345610060 / 60minus ABC04362 ABC06621 ABC14088 ABC15766 ABC40605
MLOCAK3552638192e-24433 - 49210060 / 60plus ABC14088 ABC40605
MLOCMLOC_48344.38872e-24432 - 49110060 / 60plus ABC14088 ABC40605
MLOCMLOC_48344.113833e-21682 - 7389856 / 57plus ABC14088 ABC40605
MLOCMLOC_48344.212673e-21566 - 6229856 / 57plus ABC14088 ABC40605
JLOC1JLOC1_31063.114852e-21538 - 5949856 / 57plus
Harvest21ABC140875223e-25445 - 50410060 / 60plus
Harvest21ABC406055836e-22366 - 4229856 / 57minusABC40605
Harvest35U35_59555233e-25445 - 50410060 / 60plus
Harvest35U35_59546026e-22141 - 1979856 / 57plus



Contig Sequence (523 bp)

>U35_5955 523 Hv_44K_v2
ACAAACAGCCCGCCAGGAAGCTAAGCTCGTCATGGCCATGACCATCCTCGGCGCTCTCAA
GCTGGCCCCGTCCCCGCCGGCGACGACCACCTCCTCGCTGCCGGCGTGGCGCGGCCCCTC
CTCGCTGCACTTCCACCTCGCCAAAGCTGGCGCCGCCGCGCTGGTCGCCGCCTCGCTGCT
CGTCGCCGACCCGGCCCTCGCGTTCAGGGGAGGCGGGCCGTACGGGCAGCAGGTGACGCG
GGGGCAGGACCTCACCGGCAAGGACTTCAGCGGCCAGACGCTCATCAAGCAGGACTTCAA
GACCTCCATTCTGCGGCAGACCAACTTCAAAGGCGCAAACCTGCTCGGCGCCAGCTTCTT
CGACGCGGACCTCACAGGCGCTGATCTCTCCGACGCTGATCTTAGAAACGCCGACTTCTC
GCTGGCAAATGTAACAAAGGTAAATTTAACAAATGCCAACTTGGAAGGGGCACTTGTGAC
AGGGAACACTTCTTTCAAAGGCTCCAACATATACGGGGCAGAT



Homology of Contig U35_5955 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os01g05080.11992e-66protein|thylakoid lumenal protein, putative, expressed
Brachypodium v1_2Bradi2g02930.22011e-69
Arabidopsis v10AT2G44920.22244e-62Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:18524419-18526502 FORWARD LENGTH=224