barSeed - Barley Seed Development Database

Probe CUST_18043_PI390587928

Source Contig U35_15990

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18043_PI390587928	Hv_44K_v2	CTAACAAAATATGTTGGGGTTTCCTGTAATCTCTAGTTGATAAAAGGGAGTATTCACCCG	1486	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3013.1	1587	2e-23	1 - 58	100	58 / 58	minus	ABC06838 ABC08327 ABC09216
MLOC	MLOC_3013.2	1878	2e-23	1 - 58	100	58 / 58	minus	ABC06838 ABC08327 ABC09216
JLOC1	JLOC1_1803.1	1658	8e-25	1530 - 1589	100	60 / 60	plus
Harvest21	ABC08327	760	3e-25	667 - 726	100	60 / 60	plus	ABC08327
Harvest35	U35_15990	1580	3e-25	1487 - 1546	100	60 / 60	plus

Contig Sequence (1580 bp)

>U35_15990 1580 Hv_44K_v2
AATTGACAAAAGCGCGCGGCCAGAGTTAGGAAGAAAGGTTCGACAGCGAGATAAGGAGAG
AGAGGGGGCGCGCGGGGACCTCCGTGTCAGTCTTGGGCGGCGGTAGAGTCGTCGGCGCGG
GGGCGATGGAGAGGGGGACGATGGGCGATGTGCCGGTGATGCTCGACGGCGACCGGTACG
AGCTGGTCCGCAGCATCGGATCCGGCAACTTCGGCGTCGCCCGCCTCATGCGCAACCGCG
CCTCCGGCGAGCTCGTCGCCGTCAAGTACATCGACCGCGGCGAGAAGATCGACGAGAACG
TGCAGAGGGAGATCATCAACCACAGGTCGCTGCGGCACCCCAACATCATCCGGTTCAAGG
AGGTTATTCTGACGCCGACGCATCTCGCCATCGTCATGGAGTACGCCTCCGGCGGGGAGC
TCTTCGACCGCATCTGCACCGCCGGTCGATTCAGCGTCGACGAGGCTCGCTTCTTTTTCC
AGCAACTGATATCTGGAGTTAGCTACTGCCATTCAATGCAAGTGTGCCATCGTGACTTAA
AGCTCGAGAACACTCTGCTGGATGGAAGCACCACCCCTCGCCTCAAGATATGCGACTTCG
GTTATTCCAAGTCATCAGTTCTTCATTCTCAACCAAAGTCAACTGTTGGAACTCCGGCAT
ACATTGCCCCTGAAGTTCTGATCAAGAAAGAATACGATGGCAAGATTGCCGATGTGTGGT
CATGTGGCGTAACCCTTTACGTGATGTTGGTTGGCGCCTACCCTTTCGAGGATCCAGAAA
ATCCCAAGAATTTCAAAATGACAATTCAGAAAATATTAGGCGTTCAGTACTCGATTCCGG
ACTATATTCACATACCCATGGACTGCCGGAACCTTCTCTCAAGGATCTTTGTTGCCAACC
CAGCTACGGTGAGTGCTCACTCACTCCATCGACACACACACGGTTTCACCCGTTCCGCTC
TCAGGAATCAGGATAACGCCTGTGCTATTTGAGCTTGCAGAGGATCACCATACCTGAGAT
AAAGAACCACCCATGGTTCCTCAAGAACCTCCCAGCTGACCTCATGGACGGTCCCACGGT
GAGCAACCAGTATGAGGAGCCTGACCAACCGATGCAGAACATGAACGAGATCATGCAGAT
AATGGCAGAGGCCACCATACCGGCGGCCAGCGCCCTCGGAATCAACAAGTTCCTGCCTGA
CGGCCTTGACCTCGACGACGATATGGATGACCTGGACTCGGACCTCGATATCGACATGGA
CAGCAGCGGGGAGATAGTATACGCCATGTAGTAAACTTGTGAATATCTGTATGTGCAGAA
GCGGTGTTTGCGATCTTCCACCTTGTTTGTTTCTTGAACACCCACCAGATTGTTGAGTGG
CATTTTGTGTTAAGAAGAGTGTAGAAATGTACATCGAGAGGTTTGTATTCAGGCTACTGC
TTGAGTCTGAAATTGGTGTTGCTGCTGATTGTGTAGCATGTGTTGTCTAACAAAATATGT
TGGGGTTTCCTGTAATCTCTAGTTGATAAAAGGGAGTATTCACCCGAAAAAAAAAAAAAN
NANAAAAAAAAAAAAAAAAA

Homology of Contig U35_15990 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g39630.1	362	3e-165	protein\|CAMK_CAMK_like.49 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi4g03220.1	364	2e-169
Arabidopsis v10	AT4G33950.1	362	1e-157	\| Symbols: OST1, SNRK2-6, SRK2E, SNRK2.6, P44, ATOST1 \| Protein kinase superfamily protein \| chr4:16272364-16274657 FORWARD LENGTH=362