barSeed - Barley Seed Development Database

Probe ABC09216

Source Contig ABC09216

barSeed

Links

Affymetrix Source Sequence (1702 bp)

>ABC09216 1702
TAGTGAGTGAGAGAGGGAGAGGGAGAGATCACGAGGCGGGGCTTCTCCTCCGCCCAATCC
GTTCCACCACCCTCCCCCCCTCTGGAGCTGGAGCTGGAGCTCATCATCAGCTAATTAAAC
TAAAGGCAGCAGGCCAAGGCTTCTTTCTCTCTTGGATCGCGGGGTCACGGGAGGCGCGCG
CGCGGGAGCTTGCTTGCTCGCTCGATCGACCGACCTCGCGGCGGTGGGGGAAGGGAAGGG
AAGGGGAAGGGGGATGGACCGGGCGGCGCTGACGGTGGGGCCGGGGATGGACATGCCCAT
AATGCACGACGGCGACCGGTACGAGCTCGTCAAGGACATCGGCTCCGGCAACTTCGGCGT
CGCGCGCCTCATGCGCAACCGCGCCGACGGCCAGCTCGTCGCCGTCAAGTACATCGAGCG
AGGGGAGAAGATTGACGAGAACGTGCAGCGGGAGATCATCAACCACCGGTCGCTGCGCCA
CCCCAACATCATCCGCTTCAAGGAGGTCATCCTCACGCCCACGCACCTCGCCATCGTCAT
GGAGTACGCCTCCGGCGGGGAGCTCTTCGAGCGCATCTGCAACGCCGGCAGGTTCAGCGA
GGACGAGGCGCGTTTCTTTTTCCAGCAGCTGCTCTCAGGGGTCAGCTACTGCCACTCCAT
GCAAGTATGCCATCGTGACCTGAAGCTGGAGAACACCCTGCTGGACGGGAGCACGGCTCC
CCGCCTCAAGATATGCGACTTTGGATATTCCAAGTCGTCGGTTCTTCACTCGCAGCCTAA
ATCAACCGTCGGAACCCCCGCATACATTGCTCCTGAGGTTCTTCTCAAGAAGGAATATGA
TGGAAAGATTGCGGATGTGTGGTCGTGTGGAGTGACGCTTTATGTTATGCTAGTTGGTGC
ATATCCCTTTGAGGACCCGGATGAGCCCAAGAATTTTAGGAAGACAATTCAGAGGATATT
GAGCGTGCAGTACTCGATTCCCGATTACGTGCACATATCTTCCGAGTGTCGAGATCTTAT
TGCCAAGATTTTCGTCGGCAACCCAGCTACCAGAATCACAATCCCCGAGATAAGAAACCA
TCCGTGGTTCTTGAAGAACCTCCCAGCTGACCTGGTGGATGATAGCACCATGAGCAGCCA
GTACGAGGAGCCTGAACAGCCGATGCAGAGCATGGACGAGATCATGCAGATCCTGGCGGA
GGCCACCATCCCGGCGGCTGGTTCTCGGATCAACCAGTTCTTGAACGACGGTCTCGACCT
TGACGACGACATGGACGACCTTGATTCGGACGCCGACCTCGACGTGGAAAGCAGCGGGGA
GATCGTATATGCCATGTGACACTGCAAAGGCTCTCACATATAAGTTGACCGAAAGATGGC
CAAGATACTCGAGGAAGGGATAGATATCTTGAGGCTACCGCTGAAGTTCGGCTGCTCATG
CTTGATAGCCCACAAATGTTACTTTGTTGTTGTTTTTGTTGTTGGTCCCTGTACTTCCGA
TGTTCTGAAACGGTTTAGCCTGCCTTTTGGATGTAACCATGCTTTGCTCTAATGCCGTGT
GACTATCTCCGCTAATTTGGGAACTGACCGTGTCTGTGCTCCCCTTAGATAAGGGACATG
TTATCACATCATGTTTGTACCATGTATATGTGTTGTAGGCAAATAAAGGGCACTCCAGTT
TGATCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_22145.2	1823	0.0	2 - 1688	99	1686 / 1687	CUST_174_PI415269222 CUST_8124_PI390587928	ABC06838 ABC07362 ABC09216
MLOC_22145.1	2029	0.0	1162 - 1780	99	615 / 619	CUST_174_PI415269222 CUST_8124_PI390587928	ABC06838 ABC07362 ABC09216
MLOC_22145.3	2243	2e-93	846 - 1032	100	187 / 187	None	ABC06838 ABC09216
MLOC_3013.1	1587	0.0	256 - 1294	83	862 / 1041	CUST_18043_PI390587928	ABC06838 ABC08327 ABC09216
AK374298	1591	0.0	201 - 1284	79	859 / 1088	None	ABC06838 ABC09216
MLOC_22271.1	1670	0.0	350 - 1433	79	859 / 1088	None	ABC06838 ABC09216
MLOC_3013.5	1220	0.0	312 - 1007	85	593 / 698	None	ABC06838 ABC08327 ABC09216
MLOC_3013.4	800	0.0	1 - 788	83	651 / 789	None	ABC08327 ABC09216
MLOC_3013.2	1878	3e-171	1033 - 1585	86	479 / 554	CUST_18043_PI390587928	ABC06838 ABC08327 ABC09216
MLOC_22271.2	1112	2e-153	320 - 1075	80	605 / 758	None	ABC06838 ABC09216
AK362030	1528	4e-135	170 - 845	80	540 / 678	CUST_41157_PI390587928	ABC07362 ABC08966 ABC09216 ABC18504
MLOC_13479.1	1416	4e-135	542 - 1217	80	540 / 678	CUST_18061_PI390587928	ABC07362 ABC08966 ABC09216 ABC18504
MLOC_13479.2	1153	4e-110	279 - 714	83	364 / 437	None	ABC07362 ABC08966 ABC09216
MLOC_63787.3	1571	2e-108	213 - 984	76	591 / 777	CUST_41264_PI390587928 CUST_49_PI415269222	ABC07362 ABC09216
MLOC_3013.6	1283	8e-107	734 - 1040	90	276 / 308	None	ABC06838 ABC08327 ABC09216
MLOC_22145.4	262	1e-99	32 - 232	99	200 / 201	None	ABC09216
MLOC_63787.2	3347	8e-82	213 - 726	78	403 / 519	CUST_41264_PI390587928 CUST_49_PI415269222	ABC07362 ABC09216
MLOC_63787.1	761	4e-60	213 - 540	80	264 / 331	None	ABC07362 ABC09216