barSeed - Barley Seed Development Database

Probe CUST_1773_PI390587928

Source Contig U35_6218

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1773_PI390587928	Hv_44K_v2	GATCTCAGTTGTGTCCAATTGTTGCTATGCAACAACTACATGTACTTTGATGATTTATAG	1103	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251354.1	1247	2e-24	1155 - 1214	100	60 / 60	plus	ABC12916 ABC26639 ABC28494
MLOC	MLOC_48407.1	175	7e-23	32 - 91	98	59 / 60	minus	ABC12916 ABC26639 ABC28494
MLOC	MLOC_36197.2	1939	7e-23	1831 - 1890	98	59 / 60	plus	ABC12916 ABC26639 ABC28494
MLOC	AK250875.1	1256	3e-21	1155 - 1214	97	58 / 60	plus	ABC12916 ABC26639 ABC28494
MLOC	MLOC_1079.1	958	3e-21	863 - 922	97	58 / 60	plus	ABC12916 ABC26639 ABC28494
JLOC1	JLOC1_31097.1	204	4e-23	59 - 118	98	59 / 60	minus
JLOC1	JLOC1_23298.1	762	4e-23	661 - 720	98	59 / 60	plus
JLOC1	JLOC1_665.1	1000	2e-21	804 - 863	97	58 / 60	plus
Harvest21	ABC12916	1226	3e-25	1104 - 1163	100	60 / 60	plus	ABC12916
Harvest21	ABC28494	1284	1e-23	1151 - 1210	98	59 / 60	plus	ABC28494
Harvest21	ABC26639	4904	6e-22	4605 - 4664	97	58 / 60	plus	ABC26639
Harvest35	U35_6218	1226	3e-25	1104 - 1163	100	60 / 60	plus
Harvest35	U35_29257	1284	1e-23	1151 - 1210	98	59 / 60	plus
Harvest35	U35_28026	4904	6e-22	4605 - 4664	97	58 / 60	plus

Contig Sequence (1226 bp)

>U35_6218 1226 Hv_44K_v2
GATTTTACCATGGAGAACATCCTTCATGCAACCCCAGCTCCTGTGTCCCTCCCGGAAAGC
TTCGTCTTCGCTTCCGACAAGGTCCCGCCGGCCACCAAGGCTGTCGTCTCGCTGCCCATC
ATCGATCTCTCATGTGGTCGTGATGAGGTCCGCCGTTCAATCCTCGAGGCCGGCAAGGAG
CTCGGATTCTTCCAGGTCGTCAACCATGGCGTCTCCAAACAGGTCATGCGGGACATGGAG
GGCATGTGCGAGCAGTTCTTCCATTTGCCGGCAGCGGACAAGGCATCGTTGTACTCGGAA
GAGCGACACAAGCCAAACAGGCTCTTCTCCGGTGCTACCTATGACACGGGGGGCGAGAAA
TACTGGCGGGACTGCCTCCGCCTTGCCTGCCCCTTCCCAGTTGACGACAGCATCAACGAA
TGGCCCGATACTCCCAAAGGGCTCCGGGACGTTATCGAAAAGTTCACCAGCCAAACCAGA
GATGTAGGGAAGGAATTGTTGCGCCTCTTGTGTGAGGGTATGGGGATCCGGGCTGACTAC
TTTGAGGGAGACCTTAGCGGGGGTAATGTGATCCTCAACATCAACCACTATCCATCTTGC
CCGAATCCAGACAAAGCGCTTGGACAGCCGCCACATTGTGACCGAAATCTCATCACCCTC
CTACTCCCTGGCGCTGTCAATGGCCTCGAGGTCTCCTACAAGGGGGACTGGATCAAGGTT
GACCCTGCACCTAACGCATTTGTCGTCAACTTCGGCCAACAACTCGAGGTTGTGACAAAT
GGGTTGTTAAGGAGCATAGAGCATCGTGCGATGACAAACTCGGTGCTTGCACGCACATCG
GTGGCTACCTTTATTATGCCTACTCAAGAATGTCTTATTGGTCCCGCGAAGGAGTTCCTT
AGTGAAGAAAACCCACCGTGCTACCGCACCATCATGTTTCGTGACTTCATGCGCATCTAC
AATGTTGTCAAGCTTGGGTCATCGCTCAATCTCACAACCAATCTCAAGAACGTCCAGAAG
GAGATATAAAGCAAATCTACAAGACTCCTTCAAGATCTGGAATTATCCTATTCCCACTTG
TTATGTTTCTTACCTATGCCATAGATCTCAGTTGTGTCCAATTGTTGCTATGCAACAACT
ACATGTACTTTGATGATTTATAGCAATAAAATTAATAAATACATGATGAGTATAAGACGT
TAATCATCTTAGTGCTCATTTGTTGT

Homology of Contig U35_6218 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g07410.2	341	2e-148	protein\|oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
Brachypodium v1_2	Bradi1g46480.1	349	2e-179
Arabidopsis v10	AT5G24530.1	341	6e-62	\| Symbols: DMR6 \| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein \| chr5:8378964-8383154 FORWARD LENGTH=341