barSeed - Barley Seed Development Database

Probe CUST_17584_PI390587928

Source Contig U35_44528

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17584_PI390587928	Hv_44K_v2	GTAGCGAGGTCACAGCTCGTATAGCATGCTGCTGTGTTCTTGCTACCAGCTCAATTTCTA	464	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75528.1	1343	2e-24	1161 - 1220	100	60 / 60	plus	ABC05311 ABC05312 ABC05313
JLOC1	JLOC1_50390.1	1590	8e-25	1266 - 1325	100	60 / 60	plus
Harvest21	ABC42367	524	3e-25	465 - 524	100	60 / 60	plus
Harvest21	ABC05313	734	3e-25	649 - 708	100	60 / 60	plus	ABC05313
Harvest21	ABC05312	1319	3e-25	1144 - 1203	100	60 / 60	plus	ABC05312
Harvest35	U35_44528	524	3e-25	465 - 524	100	60 / 60	plus
Harvest35	U35_1291	1368	3e-25	1178 - 1237	100	60 / 60	plus

Contig Sequence (524 bp)

>U35_44528 524 Hv_44K_v2
CACGGATGCGCGCTTCAACTCCGTCTTCAACGAGGCCATGAAGCAACATTCTGTGATCAT
CACCAAGAAGCTCCTCGAACTGTACACCGCTTTCGACGGCATCGGCACCCTGGTGGATGT
CGCCGGCGGCGTGGGTGCTGTCGTCCACACCATCACCAAGAAGTACCCGAGCATCAAGGG
GATCAACTTCGACCTTCCCCATGTGATCTCCGATGCACAGCCTTGCCCTGGCGTGGAGCA
CGTCGGCGGCGACATGTTCGAGAAGGTGCCCACCGGAGACGCCATCCTCATGAAGTGGAT
CCTCAACTGCTTTAGCGACGACGAGTGTGCCATCCTGCTCAAGAACTGCTACCACGCACT
GCCGGCGCATGGTAAGGTGATCAACGTGGAGTGTATCCTGCCGGGTTTACCGGCGTCAAG
GCCACCTACATCTACCCCGACTTCTGGGCAATGGAGTACACCAAGTAGCGAGGTCACAGC
TCGTATAGCATGCTGCTGTGTTCTTGCTACCAGCTCAATTTCTA

Homology of Contig U35_44528 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g06100.1	369	6e-54	protein\|O-methyltransferase, putative, expressed
Brachypodium v1_2	Bradi2g02390.1	356	2e-63
Arabidopsis v10	None