barSeed - Barley Seed Development Database

Probe CUST_17381_PI390587928

Source Contig U35_20596

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17381_PI390587928	Hv_44K_v2	TGCGGCAATAATTCAGAAACCGTCGGTGCAAAATAATTGAGCTGCATGCAAACGAAAAAA	631	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62332.4	1043	9e-22	738 - 792	100	55 / 55	plus	ABC01865 ABC12944
JLOC1	JLOC1_40789.4	1508	5e-22	209 - 263	100	55 / 55	plus
Harvest21	ABC12944	785	3e-25	715 - 774	100	60 / 60	plus	ABC12944
Harvest35	U35_20596	702	3e-25	632 - 691	100	60 / 60	plus

Contig Sequence (702 bp)

>U35_20596 702 Hv_44K_v2
GCGTCCATTGCGGTGGTGCATGCGCCGTCCTCCTGGCCATCGCCGTCGCGCTCGGCCTCG
GCGTCCGCGGCGGCGCGGCGCAGCTGCACGACAAGTTCTACGACGGGTCGTGCCCCGGCG
TGCACGGGGTCGTTCGGCGGGTGCTGAGGGAGGCGCACAAGGCCGATAAGCGCATTTACG
CCAGCCTCACGCGCCTCCACTTCCACGANTGCTTCGTGCAGGGATGCGACGGGTCGATTC
TGCTGGACAACAGCACGAGCATCGTGTCGGAGAAGTACGCCAAGCCGAACAACAACTCGG
TGCGCGGGTTCACGGTGGTCGACGACGTGAAGGCGGCGCTCGAGAAGGCCTGCCCCGGCG
TCGTCTCCTGCGCCGACATACTCGCCATCGCCGCCAAGGTCTCCGTCGAACTGGTACGTG
CATGCCGCATGCGAGTGCTTATCTGCCGGCGATGTACGTGTAGCATGCATGCGTTCTTTT
CACTGCTCACATTCACCGGCTTCATCACTGAGAAAAAACAACATCGTTGTTCACAGACCA
GGCGCTGCTGCCAATGTGGCAATGTACTGGCAAGCTACTGGCTAAAAGGTGCAGTAGGTA
TAGCCTAGCTCATATATGCCCGAGCTGAGCTTGCGGCAATAATTCAGAAACCGTCGGTGC
AAAATAATTGAGCTGCATGCAAACGAAAAAAAAAAAAAAAAA

Homology of Contig U35_20596 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g13200.1	334	2e-56	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g68900.1	332	2e-63
Arabidopsis v10	None