barSeed - Barley Seed Development Database

Probe CUST_1725_PI390587928

Source Contig U35_14025

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1725_PI390587928	Hv_44K_v2	GGTTAATGTAGTGTTGATTGACAATTATCGATGGATGAACTTGTGGTGTTGCGTAAAAAA	702	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355128	762	3e-21	709 - 762	100	54 / 54	plus	ABC00014 ABC00040 ABC00041 ABC00075 ABC00082 ABC00094 ABC00102 ABC00105 ABC00106 ABC00124 ABC00126 ABC00130 ABC00135 ABC00136 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00676 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC32001 ABC32138 ABC36955 ABC47839
Harvest35	U35_14025	819	3e-25	703 - 762	100	60 / 60	plus

Contig Sequence (819 bp)

>U35_14025 819 Hv_44K_v2
GTTCGATTTCACCGCCCGCAGCAGCCGCCCAAGCCGACTTCACCAAGCAGCAGCCGCCGA
CGAGCAGCAGAAGCAGGCGCGATGGCCCGTACCAAGCAGACCGCCCGCAAGTCCACCGGC
GGCAAGGCCCCCCGCAAGCAGCTCGCCACCAAGGCGGCGAGGAAGTCGGCGCCGACCACC
GGTGGCGTGAAGAAGCCTCACCGCTACAGGCCCGGGACCGTGGCGCTCCGCGAGATCCGC
AAGTACCAGAAGAGCACCGAGCTGCTGATCCGCAAGCTCCCGTTCCAGCGCCTGGTGAGG
GAGATCGCGCAGGACTTCAAGACCGACCTCAGGTTCCAGTCCCACGCCGTGCTGGCCCTC
CAGGAGGCCGCCGAGGCGTACCTCGTCGGGCTGTTCGAGGACACCAACCTGTGCGCCATC
CACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGCATCCGCGGG
GAGCGCGCCTAAGCCACCCAGAGCGCTGCATTCGGGAGCGATGACACCGTTCGCCAGCAT
TAGTATTAGTGTAGTTGATTGGCTTTCCTTGTCCAGATATGCGTCTTGTGGTTCGTTGTA
GAAACCCTGGTTGGTTGGTTCCCGTAGTTACAGAGACTTTTCTGCTTAAGTGGTTTTGGT
TTGCGGTGTTGCAAACCGATGCTTACTGTGATGCAAATTGTTGGTTAATGTAGTGTTGAT
TGACAATTATCGATGGATGAACTTGTGGTGTTGCGTAAAAAAAAAAAAAAAAAGTTGAGC
GGCCGCTCGACCATTTATCGAGGGGGCCCAATTCGCCCT

Homology of Contig U35_14025 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g04030.1	137	3e-87	protein\|histone H3, putative, expressed
Brachypodium v1_2	Bradi5g11920.3	137	1e-87
Arabidopsis v10	AT5G10980.1	136	1e-87	Histone superfamily protein \| chr5:3472591-3473349 REVERSE LENGTH=136