- Probe CUST_1721_PI390587928
- Source Contig U35_14029
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1721_PI390587928 | Hv_44K_v2 | CCCGATGGATGCCATCAAATGTTCAAACCTCTGGTTTGATAAATGGAAATGAAGCATCTT | 573 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK251519.1 | 663 | 7e-23 | 599 - 658 | 98 | 59 / 60 | plus | ABC00014 ABC00040 ABC00041 ABC00075 ABC00082 ABC00094 ABC00102 ABC00105 ABC00106 ABC00124 ABC00126 ABC00130 ABC00135 ABC00136 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00676 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC32001 ABC32138 ABC47839 |
| MLOC | MLOC_6209.1 | 383 | 3e-22 | 90 - 148 | 98 | 58 / 59 | plus | ABC00338 ABC00701 |
| MLOC | MLOC_6209.2 | 801 | 3e-22 | 90 - 148 | 98 | 58 / 59 | plus | ABC00338 ABC00701 |
| JLOC1 | JLOC1_4035.1 | 490 | 1e-22 | 90 - 148 | 98 | 58 / 59 | plus | |
| Harvest21 | ABC00701 | 651 | 3e-25 | 568 - 627 | 100 | 60 / 60 | plus | ABC00701 |
| Harvest21 | ABC00087 | 649 | 3e-25 | 584 - 643 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00467 | 635 | 1e-24 | 571 - 629 | 100 | 59 / 59 | plus | |
| Harvest21 | ABC00338 | 683 | 1e-23 | 596 - 655 | 98 | 59 / 60 | plus | ABC00338 |
| Harvest21 | ABC48092 | 541 | 5e-23 | 483 - 541 | 98 | 58 / 59 | plus | |
| Harvest35 | U35_14029 | 657 | 3e-25 | 574 - 633 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14051 | 637 | 1e-24 | 571 - 629 | 100 | 59 / 59 | plus | |
| Harvest35 | U35_14048 | 681 | 1e-23 | 596 - 655 | 98 | 59 / 60 | plus |
Contig Sequence (657 bp)
>U35_14029 657 Hv_44K_v2 CCCGGGACAACCACAGCGTAGCAGCAGCCGGATCCTTCCTCCCCCGCCCCCGCCCCCGCC CTCCATCCCAATGGCCCGCACCAAGCAGACTGCCCGCAAGTCCACCGGCGGCAAGGCGCC GAGGAAGCAGCTGGCGACCAAGGCTGCCCGCAAGTCAGCCCCGGCCACCGGCGGCACCAC CGCTTCCGCCCGGGAACCGTCGCACTCCGGGAGATCCGCAAGTACCAGAAGAGCACGGAG CTGCTCATCCGCAAGCTCCCCTTCCAGCGCCTGGTGCGGGAGATCGCGCAGGACTTCAAG ACCGACCTCCGCTTCCAGTCCTCCGCCGTCTCCGCGCTCCAGGAGGCCGCCGAGGCCTAC CTCGTCGGGCTCTTCGAGGACACAAACCTGTGCGCCATCCACGCCAAGCGCGTCACCATC ATGCCCAAGGACATCCAGCTCGCGCGCCGCATCCGCGGGGAGCGCGCATAGGCTCTGCAT GCGCCCTGTAATGCGTCAGCTGCGCCTGAATCCTGCTAGATGTTTATGACCCTGTAGCTG TTTGCTCCTCTTGTTGTTACCCCTGCTTGTATGCCCGATGGATGCCATCAAATGTTCAAA CCTCTGGTTTGATAAATGGAAATGAAGCATCTTTTATGATAAAAAAAAAAAAAAAAA
Homology of Contig U35_14029 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g06480.1 | 251 | 1e-58 | protein|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed |
| Brachypodium v1_2 | Bradi5g09837.1 | 145 | 4e-69 | |
| Arabidopsis v10 | AT5G65360.1 | 136 | 2e-58 | Histone superfamily protein | chr5:26120099-26120509 REVERSE LENGTH=136 |