barSeed - Barley Seed Development Database

Probe CUST_17160_PI390587928

Source Contig U35_18590

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17160_PI390587928	Hv_44K_v2	CTGTGCCATCTTCTCTTCTCATACTTTCAAGAGCTTTTACCCTGGCTGGGAGAATGAAAC	422	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250433.1	2875	2e-24	1610 - 1669	100	60 / 60	plus	ABC08692 ABC08693 ABC14481
MLOC	MLOC_3525.2	2244	2e-24	1729 - 1788	100	60 / 60	plus	ABC08692
MLOC	MLOC_3525.3	1992	2e-24	1477 - 1536	100	60 / 60	plus	ABC08692
MLOC	MLOC_3525.1	2278	2e-24	1658 - 1717	100	60 / 60	plus	ABC08692
JLOC1	JLOC1_2118.2	2041	8e-25	1294 - 1353	100	60 / 60	plus
JLOC1	JLOC1_2118.1	2270	8e-25	1523 - 1582	100	60 / 60	plus
Harvest21	ABC11200	1777	3e-25	1596 - 1655	100	60 / 60	plus
Harvest35	U35_18590	604	3e-25	423 - 482	100	60 / 60	plus

Contig Sequence (604 bp)

>U35_18590 604 Hv_44K_v2
AATGGCAAAGGAAGTTCAAACATCACGTAGTGGAGAAACAAAACAGACAGCTGAAGATCT
GGACGAATTTTTAAACAAGGTTAGGAAAGGTGAACGTGTATCCAATGATGAAATCTTGAG
CTTCGCGAAGCTTTTTAATGATGAATTGACCTTGGATAACATGAGCAGAGCACGCTTGGT
AAATATGTGCAAATATATGGGTATTCGACCTTTTGGCACGGATCATTACTTGAGGTTCAT
GCTTCGCAAAAAACTACGCGACATTAAGAATGATGATAAAATGATTCAAGCTGAGGGTGT
TGATTCTCTTTCTGAAGAGGAGCTCCGGCAAGCTTGCCGTGATCGCGGTCACCTTGGTCT
GCGGTCAACAGAAGAAATGCGTAAACAGCTACGAGACTGGCTGGACCTGTCACTTAATCA
TGCTGTGCCATCTTCTCTTCTCATACTTTCAAGAGCTTTTACCCTGGCTGGGAGAATGAA
ACCCGAGGATGCTGTTGTAGCAACGTTGTCTTCTTTGCCAGATGAAGTTGTGGATACAAT
TGGGACAGTATTGCCATCTGAAGATTCAGTTTCTGAGAGGAGGAGAAAACTGGAATTCCT
TGAG

Homology of Contig U35_18590 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g39550.3	743	2e-123	protein\|calcium-binding mitochondrial protein anon-60Da, putative, expressed
Brachypodium v1_2	Bradi2g26300.1	765	1e-128
Arabidopsis v10	AT3G59820.2	760	1e-101	LETM1-like protein \| chr3:22098289-22101759 REVERSE LENGTH=760